Следене
Nuno A Fonseca
Nuno A Fonseca
BIOPOLIS-CIBIO/InBIO, University of Porto, Portugal
Потвърден имейл адрес: cibio.up.pt - Начална страница
Заглавие
Позовавания
Позовавания
Година
Pan-cancer analysis of whole genomes
PJ Campbell, G Getz, JO Korbel, P Consortium
Nature 578 (7793), 82-93, 2020
1649*2020
Two independent modes of chromosome organization are revealed by cohesin removal
FS Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska ...
Nature, 2017
1056*2017
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7902013
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants
R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ...
Nucleic acids research 44 (D1), D746-D752, 2016
6352016
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
6302011
ArrayExpress update–from bulk to single-cell expression data
A Athar, A Füllgrabe, N George, H Iqbal, L Huerta, A Ali, C Snow, ...
Nucleic acids research 47 (D1), D711-D715, 2019
5372019
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ...
Nature genetics 52 (3), 331-341, 2020
5322020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
5002020
Expression Atlas update: from tissues to single cells
I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ...
Nucleic acids research 48 (D1), D77-D83, 2020
4762020
Expression Atlas: gene and protein expression across multiple studies and organisms
I Papatheodorou, NA Fonseca, M Keays, YA Tang, E Barrera, W Bazant, ...
Nucleic acids research 46 (D1), D246-D251, 2018
3932018
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ...
Nucleic acids research 42 (D1), D926-D932, 2014
3792014
Tools for mapping high-throughput sequencing data
NA Fonseca, J Rung, A Brazma, JC Marioni
Bioinformatics 28 (24), 3169-3177, 2012
3732012
Genomic basis for RNA alterations in cancer
PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ...
Nature 578 (7793), 129-136, 2020
2942020
Transcription factor activities enhance markers of drug sensitivity in cancer
LM Garcia-Alonso, F Iorio, A Matchan, NA Fonseca, P Jaaks, G Peat, ...
Cancer Research, canres. 1679.2017, 2017
1722017
A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters
D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ...
Cell 178 (6), 1465-1477. e17, 2019
1622019
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ...
Communications biology 3 (1), 56, 2020
1602020
Gramene 2018: unifying comparative genomics and pathway resources for plant research
MK Tello-Ruiz, S Naithani, JC Stein, P Gupta, M Campbell, A Olson, ...
Nucleic acids research 46 (D1), D1181-D1189, 2018
1582018
Long-range enhancers regulating Myc expression are required for normal facial morphogenesis
VV Uslu, M Petretich, S Ruf, K Langenfeld, NA Fonseca, JC Marioni, ...
Nature genetics 46 (7), 753-758, 2014
1512014
Gramene 2016: comparative plant genomics and pathway resources
MK Tello-Ruiz, J Stein, S Wei, J Preece, A Olson, S Naithani, ...
Nucleic acids research 44 (D1), D1133-D1140, 2016
1432016
Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nature communications 11 (1), 735, 2020
1362020
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