Joshua L. Payne

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Andreas WagnerUniversity of ZurichVerified email at ieu.uzh.ch
Jason H. MooreChair, Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CAVerified email at csmc.edu
MJ Eppstein, Margaret J. Eppstein, Ma...University of VermontVerified email at uvm.edu
Alejandro V CanoCNRSVerified email at umontpellier.fr
Peter Sheridan DoddsProfessor/Director, Computational Story Lab, Vermont Complex Systems Center, UVMVerified email at uvm.edu
José Aguilar-RodríguezStanford UniversityVerified email at stanford.edu
Hana RozhoňováETH ZurichVerified email at env.ethz.ch
David M McCandlishCold Spring Harbor LaboratoryVerified email at cshl.edu
Santiago F. ElenaProfessor, CSICVerified email at uv.es
Lee AltenbergAdj Full Professor of Information and Computer Sciences & Mathematics, University of Hawaii at ManoaVerified email at hawaii.edu
Joachim KrugProfessor of Theoretical Physics, University of CologneVerified email at thp.uni-koeln.de
Bhavin S KhatriImperial CollegeVerified email at physics.org
Marcel Weißneunetz.comVerified email at neunetz.com
Ard A LouisProfessor of Theoretical Physics, University of OxfordVerified email at physics.ox.ac.uk
Ramon Diaz-UriarteDepartment of Biochemistry, Universidad Autonoma de MadridVerified email at iib.uam.es
Arlin StoltzfusNIST, IBBR, UMDVerified email at umd.edu
Dov PechenickDartmouth CollegeVerified email at dartmouth.edu
Jose A. CuestaGrupo Interdisciplinar de Sistemas Complejos (GISC), Dpt. Mathematics, U Carlos III de MadridVerified email at math.uc3m.es
Nora S MartinCRG (Barcelona Collaboratorium for Modelling and Predictive Biology)Verified email at crg.eu
Paco MajicETH ZürichVerified email at env.ethz.ch

Joshua L. Payne

Principal Scientist, pRED Roche

Verified email at env.ethz.ch - Homepage

Computational Biology Evolution Gene Regulation Machine Learning Networks


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The causes of evolvability and their evolution JL Payne, A Wagner Nature Reviews Genetics 20 (1), 24-38, 2019	300	2019
The robustness and evolvability of transcription factor binding sites JL Payne, A Wagner Science 343 (6173), 875-877, 2014	165	2014
Cryptic genetic variation accelerates evolution by opening access to diverse adaptive peaks J Zheng, JL Payne, A Wagner Science 365 (6451), 347-353, 2019	113	2019
A thousand empirical adaptive landscapes and their navigability J Aguilar-Rodríguez, JL Payne, A Wagner Nature ecology & evolution 1 (2), 0045, 2017	105	2017
Mechanisms of mutational robustness in transcriptional regulation JL Payne, A Wagner Frontiers in Genetics 6, 322, 2015	99	2015
Robustness, evolvability, and the logic of genetic regulation JL Payne, JH Moore, A Wagner Artificial life 20 (1), 111-126, 2014	73	2014
Analysis of a threshold model of social contagion on degree-correlated networks PS Dodds, JL Payne Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (6 …, 2009	70	2009
From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics S Manrubia, JA Cuesta, J Aguirre, SE Ahnert, L Altenberg, AV Cano, ... Physics of Life Reviews 38, 55-106, 2021	66	2021
Information cascades on degree-correlated random networks JL Payne, PS Dodds, MJ Eppstein Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 80 (2 …, 2009	66	2009
Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis JL Payne, F Menardo, A Trauner, S Borrell, SM Gygli, C Loiseau, ... PLoS biology 17 (5), e3000265, 2019	58	2019
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016	51	2016
Function does not follow form in gene regulatory circuits JL Payne, A Wagner Scientific reports 5 (1), 13015, 2015	49	2015
Enhancers facilitate the birth of de novo genes and gene integration into regulatory networks P Majic, JL Payne Molecular biology and evolution 37 (4), 1165-1178, 2020	44	2020
Constraint and contingency in multifunctional gene regulatory circuits JL Payne, A Wagner PLoS computational biology 9 (6), e1003071, 2013	43	2013
Evolutionary dynamics on scale-free interaction networks JL Payne, MJ Eppstein IEEE Transactions on Evolutionary Computation 13 (4), 895-912, 2009	43	2009
Evolutionary dynamics on multiple scales: a quantitative analysis of the interplay between genotype, phenotype, and fitness in linear genetic programming T Hu, JL Payne, W Banzhaf, JH Moore Genetic Programming and Evolvable Machines 13, 305-337, 2012	42	2012
Mutation bias shapes the spectrum of adaptive substitutions AV Cano, H Rozhoňová, A Stoltzfus, DM McCandlish, JL Payne Proceedings of the National Academy of Sciences 119 (7), e2119720119, 2022	40	2022
The architecture of an empirical genotype-phenotype map J Aguilar-Rodríguez, L Peel, M Stella, A Wagner, JL Payne Evolution 72 (6), 1242-1260, 2018	34	2018
RNA-mediated gene regulation is less evolvable than transcriptional regulation JL Payne, F Khalid, A Wagner Proceedings of the National Academy of Sciences 115 (15), E3481-E3490, 2018	34	2018
Robustness, evolvability, and accessibility in linear genetic programming T Hu, JL Payne, W Banzhaf, JH Moore Genetic Programming: 14th European Conference, EuroGP 2011, Torino, Italy …, 2011	32	2011

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