| Persistent HIV-1 replication maintains the tissue reservoir during therapy R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer, ... Nature 530 (7588), 51-56, 2016 | 681 | 2016 |
| Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing J Archer, MS Braverman, BE Taillon, B Desany, I James, PR Harrigan, ... Aids 23 (10), 1209-1218, 2009 | 156 | 2009 |
| 16S rDNA Phylogeny and Ultrastructural Characterization ofWolbachiaIntracellular Bacteria of the Filarial NematodesBrugia malayi, B. pahangi, andWuchereria bancrofti MJ Taylor, K Bilo, HF Cross, JP Archer, AP Underwood Experimental parasitology 91 (4), 356-361, 1999 | 139 | 1999 |
| Kosakovsky Pond SL R Lorenzo-Redondo, HR Fryer, T Bedford, EY Kim, J Archer Chung YS, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH …, 2016 | 123 | 2016 |
| Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection EY Kim, R Lorenzo-Redondo, SJ Little, YS Chung, PK Phalora, ... PLoS pathogens 10 (7), e1004281, 2014 | 110 | 2014 |
| Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism J Archer, J Weber, K Henry, D Winner, R Gibson, L Lee, E Paxinos, ... PloS one 7 (11), e49602, 2012 | 108 | 2012 |
| Heat resistance of Bacillus cereus, Salmonella typhimurium and Lactobacillus delbrueckii in relation to pH and ethanol MA Casadei, R Ingram, E Hitchings, J Archer, JE Gaze International Journal of Food Microbiology 63 (1-2), 125-134, 2001 | 94 | 2001 |
| The evolutionary analysis of emerging low frequency HIV-1 CXCR4 using variants through time—an ultra-deep approach J Archer, A Rambaut, BE Taillon, PR Harrigan, M Lewis, DL Robertson PLoS computational biology 6 (12), e1001022, 2010 | 93 | 2010 |
| Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus E Simon-Loriere, R Galetto, M Hamoudi, J Archer, P Lefeuvre, DP Martin, ... PLoS Pathogens 5 (5), e1000418, 2009 | 89 | 2009 |
| Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as … RM Gibson, AM Meyer, D Winner, J Archer, F Feyertag, E Ruiz-Mateos, ... Antimicrobial agents and chemotherapy 58 (4), 2167-2185, 2014 | 87 | 2014 |
| Identifying the important HIV-1 recombination breakpoints J Archer, JW Pinney, J Fan, E Simon-Loriere, EJ Arts, M Negroni, ... PLoS computational biology 4 (9), e1000178, 2008 | 87 | 2008 |
| Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II J Archer, G Baillie, SJ Watson, P Kellam, A Rambaut, DL Robertson BMC bioinformatics 13, 1-11, 2012 | 86 | 2012 |
| Sequence determinants of breakpoint location during HIV-1 intersubtype recombination HA Baird, R Galetto, Y Gao, E Simon-Loriere, M Abreha, J Archer, J Fan, ... Nucleic acids research 34 (18), 5203-5216, 2006 | 74 | 2006 |
| OrientExpress: A new system for Laue neutron diffraction B Ouladdiaf, J Archer, GJ McIntyre, AW Hewat, D Brau, S York Physica B: Condensed Matter 385, 1052-1054, 2006 | 67 | 2006 |
| Understanding the diversification of HIV-1 groups M and O J Archer, DL Robertson Aids 21 (13), 1693-1700, 2007 | 52 | 2007 |
| Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus M Carneiro, D Hu, J Archer, C Feng, S Afonso, C Chen, JA Blanco-Aguiar, ... Genetics 205 (2), 955-965, 2017 | 48 | 2017 |
| VTBuilder: a tool for the assembly of multi isoform transcriptomes J Archer, G Whiteley, NR Casewell, RA Harrison, SC Wagstaff BMC bioinformatics 15, 1-11, 2014 | 40 | 2014 |
| Media alternatives for the collection, culture and freezing of mouse and cattle embryos AT Palasz, MB Tornesi, J Archer, RJ Mapletoft Theriogenology 44 (5), 705-714, 1995 | 36 | 1995 |
| New developments in instrumentation for X-ray and neutron fibre diffraction experiments MW Shotton, LH Pope, VT Forsyth, RC Denny, J Archer, P Langan, H Ye, ... Journal of applied crystallography 31 (5), 758-766, 1998 | 32 | 1998 |
| Back to basics–how the evolution of the extracellular matrix underpinned vertebrate evolution J Huxley‐Jones, JW Pinney, J Archer, DL Robertson, RP Boot‐Handford International journal of experimental pathology 90 (2), 95-100, 2009 | 31 | 2009 |
