Ferhat Ay

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2017
Позовавания	5168	3814
h-индекс	34	32
i10-индекс	57	52

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201020112012201320142015201620172018201920202021202220 110 150 174 195 312 362 409 404 678 789 1083 444

Публичен достъп

Преглед на всички

53 статии

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Въз основа на изисквания при финансирането

Съавтори

William Stafford NobleProfessor of Genome Sciences, University of WashingtonПотвърден имейл адрес: uw.edu
Tamer Kahveci Professor of Computer Science, University of FlordaПотвърден имейл адрес: cise.ufl.edu
Jean-Philippe VertGoogle Brain / Mines ParisTechПотвърден имейл адрес: mines-paristech.fr
Nelle VaroquauxCNRS, Université Grenoble AlpesПотвърден имейл адрес: univ-grenoble-alpes.fr
Karine Le RochProfessor, University of California, RiversideПотвърден имейл адрес: ucr.edu
Zhijun Duan, PhDInstitute for Stem Cell & Regenerative Medicine, Division of Hematology, Department of MedicineПотвърден имейл адрес: uw.edu
Jay ShendureProfessor of Genome Sciences, University of WashingtonПотвърден имейл адрес: uw.edu
Evelien BunnikAssistant Professor at University of Texas Health Science Center at San AntonioПотвърден имейл адрес: uthscsa.edu
Sushmita RoyAssociate Professor of Biostatistics and medical informatics, University of Wisconsin-MadisonПотвърден имейл адрес: biostat.wisc.edu
Wenxiu MaUniversity of California, RiversideПотвърден имейл адрес: ucr.edu
Günhan GülsoyGoogle BrainПотвърден имейл адрес: google.com
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteПотвърден имейл адрес: mit.edu
Andrew HoffmanStanfordПотвърден имейл адрес: stanford.edu
Vishnu DileepPost-Doctoral Fellow (Tsai Lab), The Picower Institute for Learning and Memory, MITПотвърден имейл адрес: mit.edu
Timothy BaileyUniversity of Nevada, RenoПотвърден имейл адрес: unr.edu
Daniel MarbachRoche Pharma Research and Early Development, Basel, SwitzerlandПотвърден имейл адрес: roche.com
Thang N. DinhAssociate Professor of Computer Science, Virginia Commonwealth UniversityПотвърден имейл адрес: vcu.edu

Следене

Ferhat Ay

Associate Professor, La Jolla Institute for Immunology

Потвърден имейл адрес: lji.org - Начална страница

Bioinformatics Computational Biology Chromatin Genomics Epigenetics


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
Identification of functional elements and regulatory circuits by Drosophila modENCODE S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ... Science 330 (6012), 1787-1797, 2010	953	2010
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014	393	2014
Imbalance of regulatory and cytotoxic SARS-CoV-2-reactive CD4+ T cells in COVID-19 BJ Meckiff, C Ramírez-Suástegui, V Fajardo, SJ Chee, A Kusnadi, ... Cell, 2020	294*	2020
A statistical approach for inferring the 3D structure of the genome N Varoquaux, F Ay, WS Noble, JP Vert Bioinformatics 30 (12), i26-i33, 2014	216	2014
Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression F Ay, EM Bunnik, N Varoquaux, SM Bol, J Prudhomme, JP Vert, WS Noble, ... Genome research 24 (6), 974-988, 2014	207	2014
Bipartite structure of the inactive mouse X chromosome X Deng, W Ma, V Ramani, A Hill, F Yang, F Ay, JB Berletch, CA Blau, ... Genome biology 16 (1), 1-21, 2015	196	2015
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Nature Methods, 2014	194	2014
Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388-1398, 2018	189	2018
Analysis methods for studying the 3D architecture of the genome F Ay, WS Noble Genome Biology 16 (1), 1-15, 2015	163	2015
Topologically-associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome Research, gr. 183699.114, 2015	154	2015
Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks D Marbach, S Roy, F Ay, PE Meyer, R Candeias, T Kahveci, CA Bristow, ... Genome Research 22 (7), 1334-1349, 2012	125	2012
Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer J Clarke, B Panwar, A Madrigal, D Singh, R Gujar, O Wood, SJ Chee, ... Journal of Experimental Medicine 216 (9), 2128-2149, 2019	118	2019
A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic acids research 43 (18), 8694-8712, 2015	109	2015
Identifying cis elements for spatiotemporal control of mammalian dna replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019	107	2019
Measuring the reproducibility and quality of Hi-C data GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ... Genome biology 20 (1), 1-19, 2019	88	2019
Severely ill COVID-19 patients display impaired exhaustion features in SARS-CoV-2-reactive CD8+ T cells A Kusnadi, C Ramírez-Suástegui, V Fajardo, SJ Chee, BJ Meckiff, ... Science Immunology 6 (55), 2021	86*	2021
Scalable steady state analysis of Boolean biological regulatory networks F Ay, F Xu, T Kahveci PloS one 4 (12), e7992, 2009	80	2009
SubMAP: aligning metabolic pathways with subnetwork mappings F Ay, M Kellis, T Kahveci Journal of Computational Biology 18 (3), 219-235, 2011	79	2011
17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells BJ Schmiedel, G Seumois, D Samaniego-Castruita, J Cayford, V Schulten, ... Nature communications 7 (1), 1-14, 2016	77	2016
Comprehensive identification and analysis of human accelerated regulatory DNA RM Gittelman, E Hun, F Ay, J Madeoy, L Pennacchio, WS Noble, ... Genome Res 25 (9), 1245-1255, 2015	77	2015

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