| Comprehensive mapping of long-range interactions reveals folding principles of the human genome E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ... science 326 (5950), 289-293, 2009 | 8470 | 2009 |
| Formation of chromosomal domains by loop extrusion G Fudenberg, M Imakaev, C Lu, A Goloborodko, N Abdennur, LA Mirny Cell reports 15 (9), 2038-2049, 2016 | 1720 | 2016 |
| Iterative correction of Hi-C data reveals hallmarks of chromosome organization M Imakaev, G Fudenberg, RP McCord, N Naumova, A Goloborodko, ... Nature methods 9 (10), 999-1003, 2012 | 1339 | 2012 |
| Organization of the mitotic chromosome N Naumova, M Imakaev, G Fudenberg, Y Zhan, BR Lajoie, LA Mirny, ... Science 342 (6161), 948-953, 2013 | 1010 | 2013 |
| Super-resolution imaging reveals distinct chromatin folding for different epigenetic states AN Boettiger, B Bintu, JR Moffitt, S Wang, BJ Beliveau, G Fudenberg, ... Nature 529 (7586), 418-422, 2016 | 830 | 2016 |
| Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition IM Flyamer, J Gassler, M Imakaev, HB Brandão, SV Ulianov, N Abdennur, ... Nature 544 (7648), 110-114, 2017 | 685 | 2017 |
| High-resolution mapping of the spatial organization of a bacterial chromosome TBK Le, MV Imakaev, LA Mirny, MT Laub Science 342 (6159), 731-734, 2013 | 612 | 2013 |
| Chromatin organization by an interplay of loop extrusion and compartmental segregation J Nuebler, G Fudenberg, M Imakaev, N Abdennur, L Mirny Biophysical Journal 114 (3), 30a, 2018 | 586 | 2018 |
| Hi-C: a method to study the three-dimensional architecture of genomes. NL Van Berkum, E Lieberman-Aiden, L Williams, M Imakaev, A Gnirke, ... JoVE (Journal of Visualized Experiments), e1869, 2010 | 568 | 2010 |
| Heterochromatin drives compartmentalization of inverted and conventional nuclei M Falk, Y Feodorova, N Naumova, M Imakaev, BR Lajoie, H Leonhardt, ... Nature 570 (7761), 395-399, 2019 | 494 | 2019 |
| Genome-wide maps of nuclear lamina interactions in single human cells J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ... Cell 163 (1), 134-147, 2015 | 479 | 2015 |
| Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains SV Ulianov, EE Khrameeva, AA Gavrilov, IM Flyamer, P Kos, ... Genome research 26 (1), 70-84, 2016 | 371 | 2016 |
| A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture J Gassler, HB Brandão, M Imakaev, IM Flyamer, S Ladstätter, ... The EMBO journal 36 (24), 3600-3618, 2017 | 324 | 2017 |
| Compaction and segregation of sister chromatids via active loop extrusion A Goloborodko, MV Imakaev, JF Marko, L Mirny Elife 5, e14864, 2016 | 282 | 2016 |
| Emerging evidence of chromosome folding by loop extrusion G Fudenberg, N Abdennur, M Imakaev, A Goloborodko, LA Mirny Cold Spring Harbor symposia on quantitative biology 82, 45-55, 2017 | 271 | 2017 |
| Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments S Fanucchi, ET Fok, E Dalla, Y Shibayama, K Börner, EY Chang, ... Nature genetics 51 (1), 138-150, 2019 | 224 | 2019 |
| Two major mechanisms of chromosome organization LA Mirny, M Imakaev, N Abdennur Current opinion in cell biology 58, 142-152, 2019 | 180 | 2019 |
| Chromatin loops as modulators of enhancer-promoter interactions in their vicinity B Doyle, G Fudenberg, M Imakaev, LA Mirny arXiv preprint arXiv:1403.1236, 2014 | 138* | 2014 |
| Chromatin loops as allosteric modulators of enhancer-promoter interactions B Doyle, G Fudenberg, M Imakaev, LA Mirny PLoS computational biology 10 (10), e1003867, 2014 | 136 | 2014 |
| FISH-ing for captured contacts: towards reconciling FISH and 3C G Fudenberg, M Imakaev Nature methods 14 (7), 673-678, 2017 | 122 | 2017 |
