| Uniform genomic data analysis in the NCI Genomic Data Commons Z Zhang, K Hernandez, J Savage, S Li, D Miller, S Agrawal, F Ortuno, ... Nature communications 12 (1), 1226, 2021 | 97 | 2021 |
| The NCI genomic data commons AP Heath, V Ferretti, S Agrawal, M An, JC Angelakos, R Arya, R Bajari, ... Nature genetics 53 (3), 257-262, 2021 | 78 | 2021 |
| Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns FM Ortuno, O Valenzuela, F Rojas, H Pomares, JP Florido, JM Urquiza, ... Bioinformatics 29 (17), 2112-2121, 2013 | 73 | 2013 |
| CSVS, a crowdsourcing database of the Spanish population genetic variability M Peña-Chilet, G Roldán, J Perez-Florido, FM Ortuno, R Carmona, ... Nucleic acids research 49 (D1), D1130-D1137, 2021 | 54 | 2021 |
| Serum cytokine profile in patients with pancreatic cancer C Torres, S Perales, MJ Alejandre, J Iglesias, RJ Palomino, M Martin, ... Pancreas 43 (7), 1042-1049, 2014 | 53 | 2014 |
| Collaborating to compete: blood profiling atlas in cancer (BloodPAC) consortium RL Grossman, B Abel, S Angiuoli, JC Barrett, D Bassett, K Bramlett, ... Clinical Pharmacology & Therapeutics 101 (5), 589-592, 2017 | 38 | 2017 |
| Prognosis relevance of serum cytokines in pancreatic cancer C Torres, A Linares, MJ Alejandre, RJ Palomino-Morales, O Caba, ... BioMed Research International 2015 (1), 518284, 2015 | 31 | 2015 |
| Integrative multi-platform meta-analysis of gene expression profiles in pancreatic ductal adenocarcinoma patients for identifying novel diagnostic biomarkers A Irigoyen, C Jimenez-Luna, M Benavides, O Caba, J Gallego, FM Ortuño, ... PLoS One 13 (4), e0194844, 2018 | 30 | 2018 |
| Multiclass classification for skin cancer profiling based on the integration of heterogeneous gene expression series JM Gálvez, D Castillo, LJ Herrera, B San Román, O Valenzuela, ... PloS one 13 (5), e0196836, 2018 | 29 | 2018 |
| Predicting the accuracy of multiple sequence alignment algorithms by using computational intelligent techniques FM Ortuno, O Valenzuela, H Pomares, F Rojas, JP Florido, JM Urquiza, ... Nucleic acids research 41 (1), e26-e26, 2013 | 29 | 2013 |
| Towards improving skin cancer diagnosis by integrating microarray and RNA-seq datasets JM Gálvez, D Castillo-Secilla, LJ Herrera, O Valenzuela, O Caba, ... IEEE journal of biomedical and health informatics 24 (7), 2119-2130, 2019 | 23 | 2019 |
| KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving relevant biological knowledge D Castillo-Secilla, JM Gálvez, F Carrillo-Perez, M Verona-Almeida, ... Computers in Biology and Medicine 133, 104387, 2021 | 22 | 2021 |
| Using cited references to improve the retrieval of related biomedical documents FM Ortuño, I Rojas, MA Andrade-Navarro, JF Fontaine BMC bioinformatics 14, 1-12, 2013 | 19 | 2013 |
| Optimization of multiple sequence alignment methodologies using a multiobjective evolutionary algorithm based on NSGA-II F Ortuno, JP Florido, JM Urquiza, H Pomares, A Prieto, I Rojas 2012 IEEE congress on evolutionary computation, 1-8, 2012 | 19 | 2012 |
| Comparing different machine learning and mathematical regression models to evaluate multiple sequence alignments FM Ortuño, O Valenzuela, B Prieto, MJ Saez-Lara, C Torres, H Pomares, ... Neurocomputing 164, 123-136, 2015 | 18 | 2015 |
| Bioinformatics and Biomedical Engineering: 5th International Work-Conference, IWBBIO 2017, Granada, Spain, April 26–28, 2017, Proceedings, Part I I Rojas, F Ortuño Springer, 2017 | 17* | 2017 |
| Identification of gene expression profiling associated with erlotinib-related skin toxicity in pancreatic adenocarcinoma patients O Caba, A Irigoyen, C Jimenez-Luna, M Benavides, FM Ortuno, J Gallego, ... Toxicology and Applied Pharmacology 311, 113-116, 2016 | 15 | 2016 |
| Automated extraction of food intake indicators from continuous meal weight measurements V Papapanagiotou, C Diou, B Langlet, I Ioakimidis, A Delopoulos Bioinformatics and Biomedical Engineering: Third International Conference …, 2015 | 13 | 2015 |
| A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways M Garrido-Rodriguez, D Lopez-Lopez, FM Ortuno, M Peña-Chilet, ... PLoS computational biology 17 (2), e1008748, 2021 | 11 | 2021 |
| Polystyrene nanoplastics affect transcriptomic and epigenomic signatures of human fibroblasts and derived induced pluripotent stem cells: Implications for human health M Stojkovic, FMO Guzmán, D Han, P Stojkovic, J Dopazo, KM Stankovic Environmental Pollution 320, 120849, 2023 | 9 | 2023 |
