OSPREY 3.0: Open‐source protein redesign for you, with powerful new features MA Hallen, JW Martin, A Ojewole, JD Jou, AU Lowegard, MS Frenkel, ... Journal of computational chemistry 39 (30), 2494-2507, 2018 | 68 | 2018 |
Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study B Guillen-Guio, JM Lorenzo-Salazar, SF Ma, PC Hou, ... The Lancet Respiratory Medicine 8 (3), 258-266, 2020 | 50 | 2020 |
(Branch and Bound over): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces AA Ojewole, JD Jou, VG Fowler, BR Donald International Conference on Research in Computational Molecular Biology, 157-172, 2017 | 35* | 2017 |
Longitudinal lung function and gas transfer in individuals with idiopathic pulmonary fibrosis: a genome-wide association study RJ Allen, JM Oldham, DA Jenkins, OC Leavy, B Guillen-Guio, ... The Lancet Respiratory Medicine 11 (1), 65-73, 2023 | 26 | 2023 |
Novel idiopathic pulmonary fibrosis susceptibility variants revealed by deep sequencing JM Lorenzo-Salazar, SF Ma, J Jou, PC Hou, B Guillen-Guio, RJ Allen, ... ERJ open research 5 (2), 2019 | 24 | 2019 |
LUTE (Local Unpruned Tuple Expansion): Accurate continuously flexible protein design with general energy functions and rigid-rotamer-like efficiency MA Hallen, JD Jou, BR Donald Biophysical Journal 112 (3), 194a, 2017 | 23 | 2017 |
BWM*: A novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design JD Jou, S Jain, IS Georgiev, BR Donald Journal of Computational Biology 23 (6), 413-424, 2016 | 23 | 2016 |
TYRO3: A potential therapeutic target in cancer PL Hsu, J Jou, SJ Tsai Experimental Biology and Medicine 244 (2), 83-99, 2019 | 19 | 2019 |
Focused neuro-otological review of superficial siderosis of the central nervous system A Yoo, J Jou, JD Klopfenstein, JC Kattah Frontiers in Neurology 9, 358, 2018 | 17 | 2018 |
PCSK6 and survival in idiopathic pulmonary fibrosis JM Oldham, RJ Allen, JM Lorenzo-Salazar, PL Molyneaux, SF Ma, ... American Journal of Respiratory and Critical Care Medicine 207 (11), 1515-1524, 2023 | 15 | 2023 |
Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD: KRas protein-protein interface AU Lowegard, MS Frenkel, GT Holt, JD Jou, AA Ojewole, BR Donald PLoS Computational Biology 16 (6), e1007447, 2020 | 13 | 2020 |
Artist identification for renaissance paintings J Jou, S Agrawal Technical report, 2011 | 12 | 2011 |
Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape JD Jou, GT Holt, AU Lowegard, BR Donald Journal of Computational Biology 27 (4), 550-564, 2020 | 11* | 2020 |
Genomic amplification of chromosome 20q13. 33 is the early biomarker for the development of sporadic colorectal carcinoma VMH Bui, C Mettling, J Jou, HS Sun BMC Medical Genomics 13, 1-11, 2020 | 10 | 2020 |
TIAM2S mediates serotonin homeostasis and provokes a pro-inflammatory immune microenvironment permissive for colorectal tumorigenesis YL Chan, WC Lai, JS Chen, JTC Tseng, PC Chuang, J Jou, CT Lee, ... Cancers 12 (7), 1844, 2020 | 9 | 2020 |
Computational analysis of energy landscapes reveals dynamic features that contribute to binding of inhibitors to CFTR-associated ligand GT Holt, JD Jou, NP Gill, AU Lowegard, JW Martin, DR Madden, ... The Journal of Physical Chemistry B 123 (49), 10441-10455, 2019 | 9 | 2019 |
Evaluation of a whole‐exome sequencing pipeline and benchmarking of causal germline variant prioritizers E Tosco‐Herrera, A Muñoz‐Barrera, D Jaspez, LA Rubio‐Rodríguez, ... Human Mutation 43 (12), 2010-2020, 2022 | 7 | 2022 |
BWM*: a novel, provable, ensemble-based dynamic programming algorithm for sparse approximations of computational protein design JD Jou, S Jain, I Georgiev, BR Donald International Conference on Research in Computational Molecular Biology, 154-166, 2015 | 7 | 2015 |
Central lung gene expression associates with myofibroblast features in idiopathic pulmonary fibrosis Y Huang, R Guzy, SF Ma, CA Bonham, J Jou, JJ Schulte, JS Kim, ... BMJ Open Respiratory Research 10 (1), e001391, 2023 | 2 | 2023 |
A critical analysis of computational protein design with sparse residue interaction graphs S Jain, JD Jou, IS Georgiev, BR Donald PLoS Computational Biology 13 (3), e1005346, 2017 | 2 | 2017 |