Alexey Stupnikov

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2019
Позовавания	180	162
h-индекс	6	6
i10-индекс	5	4

201720182019202020212022202320243 12 8 22 27 39 50 15

Публичен достъп

Преглед на всички

11 статии

0 статии

налични

неналични

Въз основа на изисквания при финансирането

Съавтори

Darragh McArtQueen's University BelfastПотвърден имейл адрес: qub.ac.uk
Frank Emmert-StreibProfessor, Tampere University, Predictive Society and Data Analytics LabПотвърден имейл адрес: bio-complexity.com
Kevin M. PrisePatrick G Johston Centre for Cancer Research, Queen's University BelfastПотвърден имейл адрес: qub.ac.uk
Kienan SavageQueen's University BelfastПотвърден имейл адрес: qub.ac.uk
Stuart A McIntoshBelfast City HospitalПотвърден имейл адрес: qub.ac.uk
Luigi MarchionniAssociate Professor of Pathology and Laboratory Medicine, Weill Cornell MedicineПотвърден имейл адрес: med.cornell.edu
Galina GlazkoUAMSПотвърден имейл адрес: uams.edu
Alexander Favorovresearch associate@oncbiostat.jhu.edu; senior fellow reasearcher@vigg.ruПотвърден имейл адрес: sensi.org
Matthias DehmerSwiss Distance University of Applied Sciences, UMIT, Hall, Tyrol, Austria, Nankai UniversityПотвърден имейл адрес: ffhs.ch
Diego F SanchezPathologist, Universidad Nacional de Asunción. Department of Oncology, JHU Medicine SchoolПотвърден имейл адрес: jhu.edu
Tejasvi MatamAnalytical ChemistПотвърден имейл адрес: mclaboratories.com
Wikum DinalankaraWeil Cornell MedicineПотвърден имейл адрес: med.cornell.edu
Mikhail GelfandVice-President for Biomedical Research, SkoltechПотвърден имейл адрес: skoltech.ru
Aleksey PeninThe Institute for Information Transmission Problems of the Russian Academy of SciencesПотвърден имейл адрес: de.bio.msu.ru
Pavel MazinSenior bioinformatician, Wellcome Sanger InstituteПотвърден имейл адрес: sanger.ac.uk
Oleg GusevJuntendo University, Life Improvement by Future Technologies (LIFT) CenterПотвърден имейл адрес: juntendo.ac.jp
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityПотвърден имейл адрес: cs.jhu.edu
Shailesh TripathiUniversity of Applied Sciences Upper Austria; TUT, TampereПотвърден имейл адрес: fh-steyr.at
Ricardo De Matos SimoesDana Farber Cancer InstituteПотвърден имейл адрес: dfci.harvard.edu
Philip D DunneQueens University BelfastПотвърден имейл адрес: qub.ac.uk

Следене

Alexey Stupnikov

Moscow Institute of Physics and Technology

Потвърден имейл адрес: phystech.edu

Bioinformatics


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
Robustness of differential gene expression analysis of RNA-seq A Stupnikov, CE McInerney, KI Savage, SA McIntosh, F Emmert-Streib, ... Computational and structural biotechnology journal 19, 3470-3481, 2021	51	2021
Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki PV Mazin, E Shagimardanova, O Kozlova, A Cherkasov, R Sutormin, ... Proceedings of the National Academy of Sciences 115 (10), E2477-E2486, 2018	37	2018
Recounting the FANTOM CAGE-Associated Transcriptome EL Imada, DF Sanchez, L Collado-Torres, C Wilks, T Matam, ... Genome research 30 (7), 1073-1081, 2020	21	2020
Comparing biological information contained in mRNA and non-coding RNAs for classification of lung cancer patients J Smolander, A Stupnikov, G Glazko, M Dehmer, F Emmert-Streib BMC cancer 19, 1-15, 2019	21	2019
samExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files A Stupnikov, S Tripathi, R de Matos Simoes, D McArt, M Salto-Tellez, ... Bioinformatics 32 (21), 3345-3347, 2016	12	2016
Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patients A Stupnikov, GV Glazko, F Emmert-Streib Chinese Journal of Cancer 34, 1-12, 2015	7	2015
Clinically actionable insights into initial and matched recurrent glioblastomas to inform novel treatment approaches HP Ellis, CE McInerney, D Schrimpf, F Sahm, A Stupnikov, M Wadsley, ... Journal of oncology 2019, 2019	6	2019
Hobotnica: exploring molecular signature quality A Stupnikov, A Sizykh, A Favorov, B Afsari, S Wheelan, L Marchionni, ... F1000Research 10 (1260), 1260, 2022	5	2022
In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data A Shevtsov, M Raevskiy, A Stupnikov, Y Medvedeva International Journal of Molecular Sciences 24 (2), 985, 2023	4	2023
Impact of variable rna-sequencing depth on gene expression signatures and target compound robustness: case study examining brain tumor (Glioma) disease progression A Stupnikov, PG O’Reilly, CE McInerney, AC Roddy, PD Dunne, ... JCO precision oncology 2, 1-17, 2018	4	2018
Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking V Bezuglov, A Stupnikov, I Skakov, V Shtratnikova, JR Pilsner, A Suvorov, ... International Journal of Molecular Sciences 24 (4), 4195, 2023	3	2023
ITAS: Integrated Transcript Annotation for Small RNA A Stupnikov, V Bezuglov, I Skakov, V Shtratnikova, JR Pilsner, A Suvorov, ... Non-Coding RNA 8 (3), 30, 2022	3	2022
NUQA: estimating cancer spatial and temporal heterogeneity and evolution through alignment-free methods AC Roddy, A Jurek-Loughrey, J Souza, A Gilmore, PG O’Reilly, ... Molecular biology and evolution 36 (12), 2883-2889, 2019	3	2019
CFM: a database of experimentally validated protocols for chemical compound-based direct reprogramming and transdifferentiation A Sizykh, K Murtazalieva, Y Vyshkvorkina, A Stupnikov, YA Medvedeva F1000Research 10, 295, 2021	2	2021
Mutational landscape of primary and recurrent glioblastoma reveals potentially actionable SNVs including WNT pathway variation MH Ellis, F Sahm, D Schrimpf, A Stupnikov, M Wadsley, C Wragg, D McArt, ... Neuro-oncology 20 (Suppl 1), i16, 2018	1	2018
scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting P Akhtyamov, L Shaheen, M Raevskiy, A Stupnikov, YA Medvedeva Briefings in Bioinformatics 25 (1), bbad447, 2024		2024
Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms A Budkina, YA Medvedeva, A Stupnikov International Journal of Molecular Sciences 24 (10), 8591, 2023		2023
Comprehensive analysis of alternative polyadenylation across cancer phenotypes EL Imada, DF Sanchez, T Matam, L Collado-Torres, C Wilks, ... Cancer Research 79 (13_Supplement), 908-908, 2019		2019
Approaches for sRNA analysis of RNA-seq data: comparison, benchmarking. Preprints 2022, 1, 0 V Bezuglov, A Stupnikov, I Skakov, V Shtratnikova, JR Pilsner, A Suvorov, ... Jung 110, 355-365, 2018		2018
original report A Stupnikov, PG O’Reilly, E Caitriona, AC Roddy, PD Dunne, A Gilmore, ...		2018

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