| CDD: a Conserved Domain Database for protein classification A Marchler-Bauer, JB Anderson, PF Cherukuri, C DeWeese-Scott, ... Nucleic acids research 33 (suppl_1), D192-D196, 2005 | 1426 | 2005 |
| CDD: a curated Entrez database of conserved domain alignments A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, ... Nucleic acids research 31 (1), 383-387, 2003 | 907 | 2003 |
| A new and updated resource for codon usage tables J Athey, A Alexaki, E Osipova, A Rostovtsev, LV Santana-Quintero, ... BMC bioinformatics 18, 1-10, 2017 | 242 | 2017 |
| MMDB: Entrez's 3D-structure database J Chen, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, ... Nucleic Acids Research 31 (1), 474-477, 2003 | 225 | 2003 |
| Molecular simulation of hydrogen adsorption in charged single-walled carbon nanotubes VV Simonyan, P Diep, JK Johnson The Journal of chemical physics 111 (21), 9778-9783, 1999 | 213 | 1999 |
| Baseline human gut microbiota profile in healthy people and standard reporting template CH King, H Desai, AC Sylvetsky, J LoTempio, S Ayanyan, J Carrie, ... PloS one 14 (9), e0206484, 2019 | 185 | 2019 |
| PubChem3D: a new resource for scientists EE Bolton, J Chen, S Kim, L Han, S He, W Shi, V Simonyan, Y Sun, ... Journal of cheminformatics 3, 1-15, 2011 | 173 | 2011 |
| Hydrogen storage in carbon nanotubes and graphitic nanofibers VV Simonyan, JK Johnson Journal of alloys and compounds 330, 659-665, 2002 | 157 | 2002 |
| Molecular simulation of xenon adsorption on single-walled carbon nanotubes VV Simonyan, JK Johnson, A Kuznetsova, JT Yates Jr The Journal of Chemical Physics 114 (9), 4180-4185, 2001 | 146 | 2001 |
| Codon and codon-pair usage tables (CoCoPUTs): facilitating genetic variation analyses and recombinant gene design A Alexaki, J Kames, DD Holcomb, J Athey, LV Santana-Quintero, ... Journal of molecular biology 431 (13), 2434-2441, 2019 | 114 | 2019 |
| RNA polymerase beta subunit (rpoB) gene and the 16S–23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for … DV Volokhov, V Simonyan, MK Davidson, VE Chizhikov Molecular phylogenetics and evolution 62 (1), 515-528, 2012 | 94 | 2012 |
| A second generation leishmanization vaccine with a markerless attenuated Leishmania major strain using CRISPR gene editing WW Zhang, S Karmakar, S Gannavaram, R Dey, P Lypaczewski, N Ismail, ... Nature Communications 11 (1), 3461, 2020 | 93 | 2020 |
| Optimization of Xe adsorption kinetics in single walled carbon nanotubes A Kuznetsova, JT Yates Jr, VV Simonyan, JK Johnson, CB Huffman, ... The Journal of Chemical Physics 115 (14), 6691-6698, 2001 | 85 | 2001 |
| A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE) TJ Wu, A Shamsaddini, Y Pan, K Smith, DJ Crichton, V Simonyan, ... Database 2014, bau022, 2014 | 79 | 2014 |
| High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis V Simonyan, K Chumakov, H Dingerdissen, W Faison, S Goldweber, ... Database 2016, baw022, 2016 | 71 | 2016 |
| High-performance integrated virtual environment (HIVE) tools and applications for big data analysis V Simonyan, R Mazumder Genes 5 (4), 957-981, 2014 | 65 | 2014 |
| Structure-based comparative analysis and prediction of N-linked glycosylation sites in evolutionarily distant eukaryotes PVN Lam, R Goldman, K Karagiannis, T Narsule, V Simonyan, V Soika, ... Genomics, Proteomics and Bioinformatics 11 (2), 96-104, 2013 | 57 | 2013 |
| HIVE-hexagon: high-performance, parallelized sequence alignment for next-generation sequencing data analysis L Santana-Quintero, H Dingerdissen, J Thierry-Mieg, R Mazumder, ... PloS one 9 (6), e99033, 2014 | 51 | 2014 |
| A complete Leishmania donovani reference genome identifies novel genetic variations associated with virulence P Lypaczewski, J Hoshizaki, WW Zhang, LI McCall, J Torcivia-Rodriguez, ... Scientific reports 8 (1), 16549, 2018 | 44 | 2018 |
| Development of a candidate reference material for adventitious virus detection in vaccine and biologicals manufacturing by deep sequencing ET Mee, MD Preston, PD Minor, S Schepelmann, X Huang, J Nguyen, ... Vaccine 34 (17), 2035-2043, 2016 | 41 | 2016 |
