| The Simons genome diversity project: 300 genomes from 142 diverse populations S Mallick, H Li, M Lipson, I Mathieson, M Gymrek, F Racimo, M Zhao, ... Nature 538 (7624), 201-206, 2016 | 1388 | 2016 |
| Early human dispersals within the Americas JV Moreno-Mayar, L Vinner, P de Barros Damgaard, C De La Fuente, ... Science 362 (6419), eaav2621, 2018 | 294 | 2018 |
| Inference and analysis of population-specific fine-scale recombination maps across 26 diverse human populations JP Spence, YS Song Science Advances 5 (10), eaaw9206, 2019 | 110 | 2019 |
| A likelihood-free inference framework for population genetic data using exchangeable neural networks J Chan, V Perrone, J Spence, P Jenkins, S Mathieson, Y Song Advances in neural information processing systems 31, 2018 | 110 | 2018 |
| Genetic diversity loss in the Anthropocene M Exposito-Alonso, TR Booker, L Czech, L Gillespie, S Hateley, ... Science 377 (6613), 1431-1435, 2022 | 109 | 2022 |
| Systematic differences in discovery of genetic effects on gene expression and complex traits H Mostafavi, JP Spence, S Naqvi, JK Pritchard Nature Genetics 55 (11), 1866-1875, 2023 | 96* | 2023 |
| Inference of complex population histories using whole-genome sequences from multiple populations M Steinrücken, J Kamm, JP Spence, YS Song Proceedings of the National Academy of Sciences 116 (34), 17115-17120, 2019 | 76 | 2019 |
| Model‐based detection and analysis of introgressed Neanderthal ancestry in modern humans M Steinrücken, JP Spence, JA Kamm, E Wieczorek, YS Song Molecular ecology 27 (19), 3873-3888, 2018 | 67 | 2018 |
| Shared heritability of human face and brain shape S Naqvi, Y Sleyp, H Hoskens, K Indencleef, JP Spence, R Bruffaerts, ... Nature genetics 53 (6), 830-839, 2021 | 65 | 2021 |
| Inference of population history using coalescent HMMs: review and outlook JP Spence, M Steinrücken, J Terhorst, YS Song Current opinion in genetics & development 53, 70-76, 2018 | 59 | 2018 |
| Two-locus likelihoods under variable population size and fine-scale recombination rate estimation JA Kamm, JP Spence, J Chan, YS Song Genetics 203 (3), 1381-1399, 2016 | 53 | 2016 |
| Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits RA Patel, SA Musharoff, JP Spence, H Pimentel, C Tcheandjieu, ... The American Journal of Human Genetics 109 (7), 1286-1297, 2022 | 45* | 2022 |
| The site frequency spectrum for general coalescents JP Spence, JA Kamm, YS Song Genetics 202 (4), 1549-1561, 2016 | 41 | 2016 |
| Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation S Fan, JP Spence, Y Feng, MEB Hansen, J Terhorst, MH Beltrame, ... Cell 186 (5), 923-939. e14, 2023 | 36 | 2023 |
| A flexible modeling and inference framework for estimating variant effect sizes from GWAS summary statistics JP Spence, N Sinnott-Armstrong, TL Assimes, JK Pritchard BioRxiv, 2022.04. 18.488696, 2022 | 20 | 2022 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 14 | 2023 |
| Stable population structure in Europe since the Iron Age, despite high mobility ML Antonio, CL Weiß, Z Gao, S Sawyer, V Oberreiter, HM Moots, ... Elife 13, e79714, 2024 | 11 | 2024 |
| A comprehensive rRNA variation atlas in health and disease. D Rothschild, TT Susanto, JP Spence, NR Genuth, N Sinnott-Armstrong, ... Biorxiv: the Preprint Server for Biology, 2023 | 8* | 2023 |
| The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles J Schreiber, C Boix, J wook Lee, H Li, Y Guan, CC Chang, JC Chang, ... Genome biology 24 (1), 79, 2023 | 7 | 2023 |
| Monitoring rapid evolution of plant populations at scale with Pool-Sequencing L Czech, Y Peng, JP Spence, PLM Lang, T Bellagio, J Hildebrandt, ... BioRxiv, 2022.02. 02.477408, 2022 | 7 | 2022 |
