| Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ... Proteomes 6 (1), 7, 2018 | 43 | 2018 |
| Survey of metaproteomics software tools for functional microbiome analysis R Sajulga, C Easterly, M Riffle, B Mesuere, T Muth, S Mehta, P Kumar, ... PLoS One 15 (11), e0241503, 2020 | 38 | 2020 |
| metaQuantome: an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes CW Easterly, R Sajulga, S Mehta, J Johnson, P Kumar, S Hubler, ... Molecular & Cellular Proteomics 18 (8), S82-S91, 2019 | 34 | 2019 |
| Gut microbial β-glucuronidases regulate host luminal proteases and are depleted in irritable bowel syndrome AL Edwinson, L Yang, S Peters, N Hanning, P Jeraldo, P Jagtap, ... Nature microbiology 7 (5), 680-694, 2022 | 32 | 2022 |
| A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases P Kumar, JE Johnson, C Easterly, S Mehta, R Sajulga, B Nunn, PD Jagtap, ... Journal of proteome research 19 (7), 2772-2785, 2020 | 26 | 2020 |
| Galaxy Training: A powerful framework for teaching! S Hiltemann, H Rasche, S Gladman, HR Hotz, D Larivière, D Blankenberg, ... PLoS computational biology 19 (1), e1010752, 2023 | 24 | 2023 |
| Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms PS Thuy-Boun, S Mehta, B Gruening, T McGowan, A Nguyen, ... Journal of Proteome Research, 2021 | 17 | 2021 |
| Challenges in peptide-spectrum matching: a robust and reproducible statistical framework for removing low-accuracy, high-scoring hits SL Hubler, P Kumar, S Mehta, C Easterly, JE Johnson, PD Jagtap, ... Journal of proteome research 19 (1), 161-173, 2019 | 15 | 2019 |
| Precursor intensity-based label-free quantification software tools for proteomic and multi-omic analysis within the Galaxy Platform. S Mehta, CW Easterly, R Sajulga, RJ Millikin, A Argentini, I Eguinoa, ... Proteomes 8(3), 15, 2020 | 14 | 2020 |
| Update on the moFF algorithm for label-free quantitative proteomics A Argentini, A Staes, B Grüning, S Mehta, C Easterly, TJ Griffin, P Jagtap, ... Journal of proteome research 18 (2), 728-731, 2018 | 13 | 2018 |
| Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration T McGowan, JE Johnson, P Kumar, R Sajulga, S Mehta, PD Jagtap, ... GigaScience 9 (4), giaa025, 2020 | 11 | 2020 |
| Bridging the chromosome-centric and biology/disease-driven human proteome projects: accessible and automated tools for interpreting the biological and pathological impact of … R Sajulga, S Mehta, P Kumar, JE Johnson, CR Guerrero, MC Ryan, ... Journal of proteome research 17 (12), 4329-4336, 2018 | 10 | 2018 |
| ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework S Mehta, M Crane, E Leith, B Batut, S Hiltemann, MØ Arntzen, BJ Kunath, ... F1000Research 10, 2021 | 8 | 2021 |
| Improve your galaxy text life: the query tabular tool JE Johnson, P Kumar, C Easterly, M Esler, S Mehta, AC Eschenlauer, ... F1000Research 7, 2018 | 8 | 2018 |
| A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019 (COVID-19) AT Rajczewski, S Mehta, DDA Nguyen, B Grüning, JE Johnson, ... Clinical Proteomics 18 (1), 15, 2021 | 7 | 2021 |
| The Galaxy platform for reproducible affinity proteomic mass spectrometry data analysis PA Stewart, BM Kuenzi, S Mehta, P Kumar, JE Johnson, P Jagtap, ... Mass Spectrometry of Proteins: Methods and Protocols, 249-261, 2019 | 7 | 2019 |
| QuanTP: a software resource for quantitative proteo-transcriptomic comparative data analysis and informatics P Kumar, P Panigrahi, J Johnson, WJ Weber, S Mehta, R Sajulga, ... Journal of proteome research 18 (2), 782-790, 2018 | 7 | 2018 |
| Updates on metaQuantome software for quantitative metaproteomics S Mehta, P Kumar, M Crane, JE Johnson, R Sajulga, DDA Nguyen, ... Journal of Proteome Research 20 (4), 2130-2137, 2021 | 5 | 2021 |
| Metatranscriptomics analysis using microbiome RNA-seq data (Galaxy Training Materials) P Jagtap, S Mehta, R Sajulga, B Batut, E Leith, P Kumar, S Hiltemann Retrieved from Galaxy Training: https://training. galaxyproject. org …, 2021 | 5 | 2021 |
| Quantitative proteogenomic characterization of inflamed murine colon tissue using an integrated discovery, verification, and validation proteogenomic workflow AT Rajczewski, Q Han, S Mehta, P Kumar, PD Jagtap, CG Knutson, ... Proteomes 10 (2), 11, 2022 | 3 | 2022 |
