Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation G Rocap, FW Larimer, J Lamerdin, S Malfatti, P Chain, NA Ahlgren, ...
Nature 424 (6952), 1042-1047, 2003
1281 2003 VirFinder: a novel k -mer based tool for identifying viral sequences from assembled metagenomic data J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun
Microbiome 5, 1-20, 2017
485 2017 Identifying viruses from metagenomic data using deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ...
Quantitative Biology 8 (1), 64-77, 2020
351 2020 Copper toxicity and cyanobacteria ecology in the Sargasso Sea EL Mann, N Ahlgren, JW Moffett, SW Chisholm
Limnology and oceanography 47 (4), 976-988, 2002
261 2002 Alignment-free NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun
Nucleic acids research 45 (1), 39-53, 2017
259 2017 Co-occurring Synechococcus ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron JA Sohm, NA Ahlgren, ZJ Thomson, C Williams, JW Moffett, MA Saito, ...
The ISME Journal 10 (2), 333-345, 2016
198 2016 Culture Isolation and Culture-Independent Clone Libraries Reveal New Marine Synechococcus Ecotypes with Distinctive Light and N Physiologies NA Ahlgren, G Rocap
Applied and Environmental Microbiology 72 (11), 7193-7204, 2006
178 2006 Diversity and distribution of marine Synechococcus: multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in … NA Ahlgren, G Rocap
Frontiers in Microbiology 3, 23758, 2012
153 2012 Aryl-homoserine lactone quorum sensing in stem-nodulating photosynthetic bradyrhizobia NA Ahlgren, CS Harwood, AL Schaefer, E Giraud, EP Greenberg
Proceedings of the National Academy of Sciences 108 (17), 7183-7188, 2011
138 2011 Measurement of Prochlorococcus ecotypes using real‐time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies NA Ahlgren, G Rocap, SW Chisholm
Environmental microbiology 8 (3), 441-454, 2006
118 2006 Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes NA Ahlgren, CA Fuchsman, G Rocap, JA Fuhrman
The ISME journal 13 (3), 618-631, 2019
108 2019 A network-based integrated framework for predicting virus–prokaryote interactions W Wang, J Ren, K Tang, E Dart, JC Ignacio-Espinoza, JA Fuhrman, ...
NAR genomics and bioinformatics 2 (2), lqaa044, 2020
87 2020 Long-term stability and Red Queen-like strain dynamics in marine viruses JC Ignacio-Espinoza, NA Ahlgren, JA Fuhrman
Nature Microbiology 5 (2), 265-271, 2020
69 2020 Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems NA Ahlgren, Y Chen, DM Needham, AE Parada, R Sachdeva, V Trinh, ...
Environmental microbiology 19 (6), 2434-2452, 2017
68 2017 The unique trace metal and mixed layer conditions of the Costa Rica upwelling dome support a distinct and dense community of Synechococcus NA Ahlgren, A Noble, AP Patton, K Roache‐Johnson, L Jackson, ...
Limnology and Oceanography 59 (6), 2166-2184, 2014
54 2014 Prediction of virus-host infectious association by supervised learning methods M Zhang, L Yang, J Ren, NA Ahlgren, JA Fuhrman, F Sun
BMC bioinformatics 18, 143-154, 2017
49 2017 Multi‐year dynamics of fine‐scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom‐up factors NA Ahlgren, JN Perelman, YC Yeh, JA Fuhrman
Environmental Microbiology 21 (8), 2948-2963, 2019
47 2019 Genomic mosaicism underlies the adaptation of marine Synechococcus ecotypes to distinct oceanic iron niches NA Ahlgren, BS Belisle, MD Lee
Environmental Microbiology 22 (5), 1801-1815, 2020
36 2020 Optimizing de novo genome assembly from PCR-amplified metagenomes S Roux, G Trubl, D Goudeau, N Nath, E Couradeau, NA Ahlgren, Y Zhan, ...
PeerJ 7, e6902, 2019
31 2019 Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a … MD Lee, NA Ahlgren, JD Kling, NG Walworth, G Rocap, MA Saito, ...
Environmental microbiology 21 (5), 1677-1686, 2019
29 2019 
Jed A. FuhrmanMcCulloch Crosby Chair of Marine Biology, University of Southern CaliforniaПотвърден имейл адрес: usc.edu
