| Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting T Cermak, EL Doyle, M Christian, L Wang, Y Zhang, C Schmidt, JA Baller, ... Nucleic acids research 39 (12), e82-e82, 2011 | 2727 | 2011 |
| Transcription activator-like effector nucleases enable efficient plant genome engineering Y Zhang, F Zhang, X Li, JA Baller, Y Qi, CG Starker, AJ Bogdanove, ... Plant physiology 161 (1), 20-27, 2013 | 563 | 2013 |
| Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways Y Qi, Y Zhang, F Zhang, JA Baller, SC Cleland, Y Ryu, CG Starker, ... Genome research 23 (3), 547-554, 2013 | 196 | 2013 |
| The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease AA Pragman, T Lyu, JA Baller, TJ Gould, RF Kelly, CS Reilly, RE Isaacson, ... Microbiome 6, 1-19, 2018 | 127 | 2018 |
| An RNA polymerase III subunit determines sites of retrotransposon integration PL Antoine Bridier-Nahmias, Aurélie Tchalikian-Cosson, Joshua A. Baller ... Science 348 (6234), 585-588, 2015 | 84 | 2015 |
| Putting genetic interactions in context through a global modular decomposition J Bellay, G Atluri, TL Sing, K Toufighi, M Costanzo, PSM Ribeiro, ... Genome research 21 (8), 1375-1387, 2011 | 73 | 2011 |
| A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon JA Baller, J Gao, R Stamenova, MJ Curcio, DF Voytas Genome research 22 (4), 704-713, 2012 | 70 | 2012 |
| Comprehensive functional analysis of the Enterococcus faecalis core genome using an ordered, sequence-defined collection of insertional mutations in strain OG1RF JL Dale, KB Beckman, JLE Willett, JL Nilson, NP Palani, JA Baller, ... Msystems 3 (5), 10.1128/msystems. 00062-18, 2018 | 58 | 2018 |
| The Three Clades of the Telomere-Associated TLO Gene Family of Candida albicans Have Different Splicing, Localization, and Expression Features MZ Anderson, JA Baller, K Dulmage, L Wigen, J Berman Eukaryotic cell 11 (10), 1268-1275, 2012 | 45 | 2012 |
| Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2 MZ Anderson, AC Gerstein, L Wigen, JA Baller, J Berman PLoS genetics 10 (7), e1004436, 2014 | 34 | 2014 |
| ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: a disconnect between somatic and germinal cells Q Shan, NJ Baltes, P Atkins, ER Kirkland, Y Zhang, JA Baller, LG Lowder, ... Journal of genetics and genomics= Yi chuan xue bao 45 (12), 681, 2018 | 31 | 2018 |
| Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5 JA Baller, J Gao, DF Voytas Proceedings of the National Academy of Sciences 108 (51), 20351-20356, 2011 | 30 | 2011 |
| CHURP: A lightweight CLI framework to enable novice users to analyze sequencing datasets in parallel J Baller, T Kono, A Herman, Y Zhang Proceedings of the Practice and Experience in Advanced Research Computing on …, 2019 | 29 | 2019 |
| Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants Y Qi, Y Zhang, JA Baller, DF Voytas Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 783, 9-14, 2016 | 28 | 2016 |
| Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres HJ Tsai, JA Baller, I Liachko, A Koren, LS Burrack, MA Hickman, ... MBio 5 (5), 10.1128/mbio. 01703-14, 2014 | 21 | 2014 |
| Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut JD Shah, J Baller, Y Zhang, K Silverstein, Z Xing, CJ Cardona Journal of virological methods 209, 15-24, 2014 | 16 | 2014 |
| Development of the intestinal RNA virus community of healthy broiler chickens JD Shah, PT Desai, Y Zhang, SK Scharber, J Baller, ZS Xing, CJ Cardona PLoS One 11 (2), e0150094, 2016 | 10 | 2016 |
| Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss Environmental Toxicology and Chemistry 41 (9), 2107-2123, 2022 | 1 | 2022 |
| Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies MD Jankowski, DJ Fairbairn, JA Baller, BM Westerhoff, HL Schoenfuss | | 2022 |
| A Partnership Framework for Scaling a Workforce of Research Cyberprofessionals J Baller, C Henzler, J Wilgenbusch Practice and Experience in Advanced Research Computing, 1-6, 2022 | | 2022 |
