Paulo P. Amaral
Paulo P. Amaral
Assistant Professor, Insper Institute of Education and Research
Потвърден имейл адрес: insper.edu.br
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
ME Dinger, PP Amaral, TR Mercer, KC Pang, SJ Bruce, BB Gardiner, ...
Genome research 18 (9), 1433-1445, 2008
The eukaryotic genome as an RNA machine
PP Amaral, ME Dinger, TR Mercer, JS Mattick
science 319 (5871), 1787-1789, 2008
MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
H Sunwoo, ME Dinger, JE Wilusz, PP Amaral, JS Mattick, DL Spector
Genome research 19 (3), 347-359, 2009
lncRNAdb: a reference database for long noncoding RNAs
PP Amaral, MB Clark, DK Gascoigne, ME Dinger, JS Mattick
Nucleic acids research 39 (suppl_1), D146-D151, 2011
Noncoding RNA in development
PP Amaral, JS Mattick
Mammalian genome 19 (7), 454-492, 2008
The reality of pervasive transcription
MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft, JL Rinn, ...
PLoS biology 9 (7), e1000625, 2011
RNA regulation of epigenetic processes
JS Mattick, PP Amaral, ME Dinger, TR Mercer, MF Mehler
Bioessays 31 (1), 51-59, 2009
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
HI Nakaya, PP Amaral, R Louro, A Lopes, AA Fachel, YB Moreira, ...
Genome biology 8 (3), 1-25, 2007
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
PP Amaral, C Neyt, SJ Wilkins, ME Askarian-Amiri, SM Sunkin, ...
Rna 15 (11), 2013-2027, 2009
Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications
ME Dinger, PP Amaral, TR Mercer, JS Mattick
Briefings in Functional Genomics and Proteomics 8 (6), 407-423, 2009
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci
PP Amaral, T Leonardi, N Han, E Viré, DK Gascoigne, R Arias-Carrasco, ...
Genome biology 19 (1), 1-21, 2018
Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective
PP Amaral, ME Dinger, JS Mattick
Briefings in functional genomics 12 (3), 254-278, 2013
Androgen responsive intronic non-coding RNAs
R Louro, HI Nakaya, PP Amaral, F Festa, MC Sogayar, AM da Silva, ...
BMC biology 5 (1), 1-14, 2007
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
DK Gascoigne, SW Cheetham, PB Cattenoz, MB Clark, PP Amaral, ...
Bioinformatics 28 (23), 3042-3050, 2012
RNA modifications detection by comparative Nanopore direct RNA sequencing
A Leger, PP Amaral, L Pandolfini, C Capitanchik, F Capraro, V Miano, ...
Nature Communications 12 (1), 1-17, 2021
The non-coding snRNA 7SKcontrols transcriptional termination, poising, and bidirectionality in embryonic stem cells
G Castelo-Branco, PP Amaral, PG Engström, SC Robson, SC Marques, ...
Genome biology 14 (9), 1-18, 2013
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination
DS de Lima, LE Cardozo, V Maracaja-Coutinho, A Suhrbier, K Mane, ...
Proceedings of the National Academy of Sciences 116 (34), 17121-17126, 2019
A lncRNA fine tunes the dynamics of a cell state transition involving Lin28, let-7 and de novo DNA methylation
MA Li, PP Amaral, P Cheung, JH Bergmann, M Kinoshita, T Kalkan, ...
Elife 6, e23468, 2017
The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation
CC Bell, PP Amaral, A Kalsbeek, GW Magor, KR Gillinder, P Tangermann, ...
Scientific reports 6 (1), 1-11, 2016
Re-place your BETs: the dynamics of super enhancers
PP Amaral, AJ Bannister
Molecular cell 56 (2), 187-189, 2014
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Статии 1–20