|Genetics of rheumatoid arthritis contributes to biology and drug discovery|
Y Okada, D Wu, G Trynka, T Raj, C Terao, K Ikari, Y Kochi, K Ohmura, ...
Nature 506 (7488), 376, 2014
|Defining the role of common variation in the genomic and biological architecture of adult human height|
AR Wood, T Esko, J Yang, S Vedantam, TH Pers, S Gustafsson, AY Chu, ...
Nature genetics 46 (11), 1173, 2014
|PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene–disease associations|
JC Denny, MD Ritchie, MA Basford, JM Pulley, L Bastarache, ...
Bioinformatics 26 (9), 1205-1210, 2010
|A gene-based association method for mapping traits using reference transcriptome data|
ER Gamazon, HE Wheeler, KP Shah, SV Mozaffari, K Aquino-Michaels, ...
Nature genetics 47 (9), 1091, 2015
|Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data|
JC Denny, L Bastarache, MD Ritchie, RJ Carroll, R Zink, JD Mosley, ...
Nature biotechnology 31 (12), 1102, 2013
|MedEx: a medication information extraction system for clinical narratives|
H Xu, SP Stenner, S Doan, KB Johnson, LR Waitman, JC Denny
Journal of the American Medical Informatics Association 17 (1), 19, 2010
|The electronic medical records and genomics (eMERGE) network: past, present, and future|
O Gottesman, H Kuivaniemi, G Tromp, WA Faucett, R Li, TA Manolio, ...
Genetics in Medicine 15 (10), 761, 2013
|Inactivating Mutations in NPC1L1 and Protection from Coronary Heart Disease|
Myocardial Infarction Genetics Consortium Investigators
New England Journal of Medicine 371 (22), 2072-2082, 2014
|Operational implementation of prospective genotyping for personalized medicine: the design of the Vanderbilt PREDICT project|
JM Pulley, JC Denny, JF Peterson, GR Bernard, CL Vnencak-Jones, ...
Clinical Pharmacology & Therapeutics, 2012
|Electronic medical records for genetic research: results of the eMERGE consortium|
AN Kho, JA Pacheco, PL Peissig, L Rasmussen, KM Newton, N Weston, ...
Sci Transl Med 3, 79re1, 2011
|Robust replication of genotype-phenotype associations across multiple diseases in an electronic medical record|
MD Ritchie, JC Denny, DC Crawford, AH Ramirez, JB Weiner, JM Pulley, ...
The American Journal of Human Genetics 86 (4), 560-572, 2010
|Data from clinical notes: a perspective on the tension between structure and flexible documentation|
ST Rosenbloom, JC Denny, H Xu, N Lorenzi, WW Stead, KB Johnson
Journal of the American Medical Informatics Association 18 (2), 181-186, 2011
|Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network|
KM Newton, PL Peissig, AN Kho, SJ Bielinski, RL Berg, V Choudhary, ...
Journal of the American Medical Informatics Association 20 (e1), e147-e154, 2013
|Variants Near< i> FOXE1</i> Are Associated with Hypothyroidism and Other Thyroid Conditions: Using Electronic Medical Records for Genome-and Phenome-wide Studies|
JC Denny, DC Crawford, MD Ritchie, SJ Bielinski, MA Basford, Y Bradford, ...
The American Journal of Human Genetics 89 (4), 529-542, 2011
|Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function|
C Pattaro, A Teumer, M Gorski, AY Chu, M Li, V Mijatovic, M Garnaas, ...
Nature communications 7, 10023, 2016
|Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study|
AN Kho, MG Hayes, L Rasmussen-Torvik, JA Pacheco, WK Thompson, ...
Journal of the American Medical Informatics Association 19 (2), 212-218, 2012
|Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data|
TA Lasko, JC Denny, MA Levy
PloS one 8 (6), e66341, 2013
|A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries|
M Jiang, Y Chen, M Liu, ST Rosenbloom, S Mani, JC Denny, H Xu
Journal of the American Medical Informatics Association 18 (5), 601-606, 2011
|Detecting drug interactions from adverse-event reports: interaction between paroxetine and pravastatin increases blood glucose levels|
NP Tatonetti, JC Denny, SN Murphy, GH Fernald, G Krishnan, V Castro, ...
Clinical Pharmacology & Therapeutics 90 (1), 133-142, 2011
|PCSK9 genetic variants and risk of type 2 diabetes: a mendelian randomisation study|
AF Schmidt, DI Swerdlow, MV Holmes, RS Patel, Z Fairhurst-Hunter, ...
The lancet Diabetes & endocrinology 5 (2), 97-105, 2017