Следене
Raphael Chaleil
Raphael Chaleil
Oxcitas
Потвърден имейл адрес: oxcitas.com
Заглавие
Позовавания
Позовавания
Година
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
4222015
SwarmDock: a server for flexible protein–protein docking
M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates
Bioinformatics 29 (6), 807-809, 2013
3062013
The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness
PVACH Daisy Melandri, Iva Zlatareva, Raphaël A. G. Chaleil, Robin J. Dart ...
Nature Immunology, 2018
2012018
Butyrophilin-2A1 directly binds germline-encoded regions of the Vγ9Vδ2 TCR and is essential for phosphoantigen sensing
MM Karunakaran, CR Willcox, M Salim, D Paletta, AS Fichtner, A Noll, ...
Immunity 52 (3), 487-498. e6, 2020
1892020
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Application of abductive ILP to learning metabolic network inhibition from temporal data
A Tamaddoni-Nezhad, R Chaleil, A Kakas, S Muggleton
Machine Learning 64, 209-230, 2006
1152006
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Evolution of enzymes in metabolism: a network perspective
R Alves, RAG Chaleil, MJE Sternberg
Journal of Molecular Biology 320 (4), 751-770, 2002
1082002
A simple biophysical model emulates budding yeast chromosome condensation
TMK Cheng, S Heeger, RAG Chaleil, N Matthews, A Stewart, J Wright, ...
Elife 4, e05565, 2015
992015
Implicit flexibility in protein docking: cross‐docking and local refinement
M Król, RAG Chaleil, AL Tournier, PA Bates
Proteins: Structure, Function, and Bioinformatics 69 (4), 750-757, 2007
812007
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
A Markov‐chain model description of binding funnels to enhance the ranking of docked solutions
M Torchala, IH Moal, RAG Chaleil, R Agius, PA Bates
Proteins: Structure, Function, and Bioinformatics 81 (12), 2143-2149, 2013
382013
Flexible protein-protein docking with SwarmDock
IH Moal, RAG Chaleil, PA Bates
Protein Complex Assembly: Methods and Protocols, 413-428, 2018
242018
A machine learning approach for ranking clusters of docked protein‐protein complexes by pairwise cluster comparison
E Pfeiffenberger, RAG Chaleil, IH Moal, PA Bates
Proteins: Structure, Function, and Bioinformatics 85 (3), 528-543, 2017
212017
Modeling the effects of toxins in metabolic networks
A Tamaddoni-Nezhad, R Chaleil, AC Kakas, M Sternberg, J Nicholson, ...
IEEE Engineering in Medicine and Biology Magazine 26 (2), 37, 2007
192007
Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDock
M Torchala, T Gerguri, RAG Chaleil, P Gordon, F Russell, M Keshani, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 962-972, 2020
162020
Abduction and induction for learning models of inhibition in metabolic networks
A Tamaddoni-Nezhad, R Chaleil, A Kakas, S Muggleton
Fourth International Conference on Machine Learning and Applications (ICMLA …, 2005
112005
Two-stage Bayesian networks for metabolic network prediction
JW Bang, R Chaleil, J Williamson
Proceedings of the Workshop on Qualitative and Model-Based Reasoning in …, 2003
52003
Interplay of adherens junctions and matrix proteolysis determines the invasive pattern and growth of squamous cell carcinoma
T Kato, RP Jenkins, S Derzsi, M Tozluoglu, A Rullan, S Hooper, ...
ELife 12, e76520, 2023
22023
The role of bivalent ions in the regulation of D-loop extension mediated by DMC1 during meiotic recombination
V Altmannova, M Spirek, L Orlic, A Jēkabsons, T Clarence, A Henggeler, ...
Iscience 25 (11), 2022
22022
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