Следене
Jai Ram Rideout
Jai Ram Rideout
One Codex
Потвърден имейл адрес: onecodex.com
Заглавие
Позовавания
Позовавания
Година
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
139452019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6, 1-17, 2018
37852018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
10172018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
7922012
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
6212014
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
5362018
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15, 1-13, 2014
4412014
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
LK Ursell, JC Clemente, JR Rideout, D Gevers, JG Caporaso, R Knight
Journal of Allergy and Clinical Immunology 129 (5), 1204-1208, 2012
3902012
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ...
MSystems 3 (6), 10.1128/msystems. 00219-18, 2018
1942018
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3, 1-10, 2015
1892015
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
Inc 6, e27295v2, 2018
1712018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
1302012
mockrobiota: a public resource for microbiome bioinformatics benchmarking
NA Bokulich, JR Rideout, WG Mercurio, A Shiffer, B Wolfe, CF Maurice, ...
Msystems 1 (5), 10.1128/msystems. 00062-16, 2016
692016
Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone
DW Kang, JK DiBaise, ZE Ilhan, MD Crowell, JR Rideout, JG Caporaso, ...
Anaerobe 33, 33-41, 2015
612015
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer, D McDonald, ...
Microbiome 4, 1-10, 2016
592016
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
JR Rideout, JH Chase, E Bolyen, G Ackermann, A González, R Knight, ...
Gigascience 5 (1), s13742-016-0133-6, 2016
482016
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
342015
Optimizing taxonomic classification of marker gene amplicon sequences
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
PeerJ Preprints 6, e3208v2, 2018
332018
Sunpy: A python package for solar physics
S Mumford, N Freij, S Christe, J Ireland, F Mayer, V Hughitt, A Shih, ...
Journal of Open Source Software 5 (46), 2020
282020
Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins
NE Stone, AE Nunnally, V Jimenez Jr, EK Cope, JW Sahl, K Sheridan, ...
Anaerobe 58, 53-72, 2019
232019
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