Следене
Jai Ram Rideout
Jai Ram Rideout
One Codex
Потвърден имейл адрес: onecodex.com
Заглавие
Позовавания
Позовавания
Година
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
93152019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
92952019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
92952019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6 (1), 1-17, 2018
26332018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
8982018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1, 1-6, 2012
7292012
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
5652014
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
4202018
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15, 1-13, 2014
3972014
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
LK Ursell, JC Clemente, JR Rideout, D Gevers, JG Caporaso, R Knight
Journal of Allergy and Clinical Immunology 129 (5), 1204-1208, 2012
3512012
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3 (1), 1-10, 2015
1662015
q2-longitudinal: longitudinal and paired-sample analyses of microbiome data
NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ...
MSystems 3 (6), e00219-18, 2018
1432018
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
962012
mockrobiota: a public resource for microbiome bioinformatics benchmarking
NA Bokulich, JR Rideout, WG Mercurio, A Shiffer, B Wolfe, CF Maurice, ...
Msystems 1 (5), e00062-16, 2016
632016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (PeerJ Preprints)
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
592018
Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone
DW Kang, JK DiBaise, ZE Ilhan, MD Crowell, JR Rideout, JG Caporaso, ...
Anaerobe 33, 33-41, 2015
532015
Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer, D McDonald, ...
Microbiome 4 (1), 1-10, 2016
522016
Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
JR Rideout, JH Chase, E Bolyen, G Ackermann, A González, R Knight, ...
Gigascience 5 (1), s13742-016-0133-6, 2016
392016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
JR Rideout, MR Dillon, NA Bokulich, C Abnet, A Gabriel, A Ghalith, ...
PeerJ Prepr 6, 1-53, 2018
322018
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
312015
Системата не може да изпълни операцията сега. Опитайте отново по-късно.
Статии 1–20