Modeling sample variables with an Experimental Factor Ontology J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ... Bioinformatics 26 (8), 1112-1118, 2010 | 594 | 2010 |
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 512 | 2009 |
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ... Nucleic acids research 39 (suppl_1), D1002-D1004, 2010 | 391 | 2010 |
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012 | 186 | 2012 |
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button M Swertz, M Dijkstra, T Adamusiak, J van der Velde, A Kanterakis, E Roos, ... BMC bioinformatics 11 (Suppl 12), S12, 2010 | 139 | 2010 |
OntoCAT-simple ontology search and integration in Java, R and REST/JavaScript T Adamusiak, T Burdett, N Kurbatova, KJ van der Velde, ... BMC bioinformatics 12 (1), 218, 2011 | 64 | 2011 |
Age and environment-related differences in gait in healthy adults using wearables MD Czech, D Psaltos, H Zhang, T Adamusiak, M Calicchio, A Kelekar, ... NPJ digital medicine 3 (1), 127, 2020 | 46 | 2020 |
Observ‐OM and Observ‐TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information T Adamusiak, H Parkinson, J Muilu, E Roos, KJ van der Velde, ... Human mutation 33 (5), 867-873, 2012 | 29 | 2012 |
Next generation phenotyping using the unified medical language system T Adamusiak, N Shimoyama, M Shimoyama JMIR medical informatics 2 (1), e3172, 2014 | 28 | 2014 |
Translating standards into practice: one semantic web API for gene expression HF Deus, J Zhao, JP McCusker, R Fox, E Prud'hommeaux, J Malone, ... Proceedings of the 4th International Workshop on Semantic Web Applications …, 2011 | 26 | 2011 |
Scikit digital health: Python package for streamlined wearable inertial sensor data processing L Adamowicz, Y Christakis, MD Czech, T Adamusiak JMIR mHealth and uHealth 10 (4), e36762, 2022 | 20 | 2022 |
VarioML framework for comprehensive variation data representation and exchange M Byrne, IFAC Fokkema, O Lancaster, T Adamusiak, A Ahonen-Bishopp, ... BMC bioinformatics 13, 1-10, 2012 | 20 | 2012 |
ontoCAT: an R package for ontology traversal and search N Kurbatova, T Adamusiak, P Kurnosov, MA Swertz, M Kapushesky Bioinformatics 27 (17), 2468-2470, 2011 | 19 | 2011 |
Quality assurance of UMLS semantic type assignments using SNOMED CT hierarchies H Gu, Y Chen, Z He, M Halper, L Chen Methods of information in medicine 55 (02), 158-165, 2016 | 17 | 2016 |
Quality assurance in LOINC using Description Logic T Adamusiak, O Bodenreider AMIA Annual Symposium Proceedings 2012, 1099, 2012 | 15 | 2012 |
Anatomy ontologies and potential users: bridging the gap RS Travillian, T Adamusiak, T Burdett, M Gruenberger, J Hancock, ... Journal of Biomedical Semantics 2, 1-10, 2011 | 12 | 2011 |
EHR-based phenome wide association study in pancreatic cancer T Adamusiak, M Shimoyama AMIA Summits on Translational Science Proceedings 2014, 9, 2014 | 6 | 2014 |
Wearable-based stair climb power estimation and activity classification DJ Psaltos, F Mamashli, T Adamusiak, C Demanuele, M Santamaria, ... Sensors 22 (17), 6600, 2022 | 2 | 2022 |
Rapid Development of an Ontology of Coriell Cell Lines. C Pang, T Adamusiak, HE Parkinson, J Malone ICBO, 2011 | 1 | 2011 |
The Coriell Cell Line Ontology: Rapidly Developing Large Ontologies C Pang, T Adamusiak, H Parkinson, J Malone Bio-Ontologies 2011, 2011 | 1 | 2011 |