Cole Trapnell

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2017
Позовавания	98479	63984
h-индекс	62	57
i10-индекс	83	83

13000

6500

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9750

2010201120122013201420152016201720182019202020212022631 1464 3028 4655 6610 7907 9284 10552 11016 11885 11711 12934 5849

Публичен достъп

Преглед на всички

86 статии

1 статия

налични

неналични

Въз основа на изисквания при финансирането

Съавтори

Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityПотвърден имейл адрес: jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechПотвърден имейл адрес: caltech.edu
John RinnUniversity of Colorado (CU Boulder)Потвърден имейл адрес: colorado.edu
Jay ShendureProfessor of Genome Sciences, University of WashingtonПотвърден имейл адрес: uw.edu
Loyal A. GoffJohns Hopkins Institute of Genetic MedicineПотвърден имейл адрес: jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentПотвърден имейл адрес: jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityПотвърден имейл адрес: cs.jhu.edu
David R KelleyCalico LabsПотвърден имейл адрес: calicolabs.com
Mihai PopProfessor of Computer Science, University of Maryland, College ParkПотвърден имейл адрес: umd.edu
Adam RobertsGoogle BrainПотвърден имейл адрес: google.com
Daehwan KimMichael L. Rosenberg Assistant Professor of Bioinformatics at the University of Texas SouthwesternПотвърден имейл адрес: UTSouthwestern.edu
Tarjei S. MikkelsenArsenalBioПотвърден имейл адрес: alum.mit.edu
Ali MortazaviProfessor of Developmental and Cell Biology, University of California, IrvineПотвърден имейл адрес: uci.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityПотвърден имейл адрес: cs.jhu.edu
Julius B. LucksProfessor, Northwestern UniversityПотвърден имейл адрес: northwestern.edu
Bruce C. Trapnell, MDProfessor of Medicine and Pediatrics, University of CincinnatiПотвърден имейл адрес: cchmc.org
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OПотвърден имейл адрес: lbl.gov
Arjun RajProfessor of Bioengineering, Professor of Genetics, University of PennsylvaniaПотвърден имейл адрес: seas.upenn.edu
Marcel E. DingerUNSW SydneyПотвърден имейл адрес: marceldinger.net
Amitabh VarshneyDean, College of Computer, Mathematical, and Natural Sciences,Professor of Computer ScienceПотвърден имейл адрес: cs.umd.edu

Следене

Cole Trapnell

Assistant Professor, University of Washington

Потвърден имейл адрес: uw.edu - Начална страница

transcriptomics sequencing assays cell differentiation noncoding RNA


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10 (3), 1-10, 2009	20474	2009
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	12991	2010
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	12293	2009
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14 (4), 1-13, 2013	11507	2013
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	11154	2012
Differential analysis of gene regulation at transcript resolution with RNA-seq C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter Nature biotechnology 31 (1), 46-53, 2013	3351	2013
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn Genes & development 25 (18), 1915-1927, 2011	3244	2011
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells C Trapnell, D Cacchiarelli, J Grimsby, P Pokharel, S Li, M Morse, ... Nature biotechnology 32 (4), 381-386, 2014	3152	2014
Reversed graph embedding resolves complex single-cell trajectories X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell Nature methods 14 (10), 979-982, 2017	1620	2017
Improving RNA-Seq expression estimates by correcting for fragment bias A Roberts, C Trapnell, J Donaghey, JL Rinn, L Pachter Genome biology 12 (3), 1-14, 2011	1177	2011
Computational methods for transcriptome annotation and quantification using RNA-seq M Garber, MG Grabherr, M Guttman, C Trapnell Nature methods 8 (6), 469-477, 2011	1149	2011
The single-cell transcriptional landscape of mammalian organogenesis J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ... Nature 566 (7745), 496-502, 2019	1115	2019
Identification of novel transcripts in annotated genomes using RNA-Seq A Roberts, H Pimentel, C Trapnell, L Pachter Bioinformatics 27 (17), 2325-2329, 2011	1051	2011
Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017	870	2017
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing DA Cusanovich, R Daza, A Adey, HA Pliner, L Christiansen, ... Science 348 (6237), 910-914, 2015	816	2015
Single-cell mRNA quantification and differential analysis with Census X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell Nature methods 14 (3), 309-315, 2017	812	2017
Defining cell types and states with single-cell genomics C Trapnell Genome research 25 (10), 1491-1498, 2015	597	2015
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	584	2014
Targeted RNA sequencing reveals the deep complexity of the human transcriptome TR Mercer, DJ Gerhardt, ME Dinger, J Crawford, C Trapnell, JA Jeddeloh, ... Nature biotechnology 30 (1), 99-104, 2012	484	2012
Joint profiling of chromatin accessibility and gene expression in thousands of single cells J Cao, DA Cusanovich, V Ramani, D Aghamirzaie, HA Pliner, AJ Hill, ... Science 361 (6409), 1380-1385, 2018	466	2018

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