Karel Břinda
Karel Břinda
Harvard Medical School
Потвърден имейл адрес: hms.harvard.edu - Начална страница
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Позовавания
Позовавания
Година
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15, 475–476, 2018
2692018
Spaced seeds improve k-mer-based metagenomic classification
K Břinda, M Sykulski, G Kucherov
Bioinformatics 31 (22), 3584-3592, 2015
562015
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing
K Břinda, A Callendrello, K Ma, D Macfadden, R Lee, T Charalampous, ...
Nature Microbiology, 2020
22*2020
RNF: a general framework to evaluate NGS read mappers
K Břinda, V Boeva, G Kucherov
Bioinformatics 32 (1), 136-139, 2016
162016
Blind friendly maps: Tactile maps for the blind as a part of the public map portal (mapy. cz)
P Červenka, K Břinda, M Hanousková, P Hofman, R Seifert
ICCHP 2016: 15th International Conference on Computers Helping People with …, 2016
15*2016
Abelian complexity of infinite words associated with quadratic Parry numbers
Ľ Balková, K Břinda, O Turek
Theoretical Computer Science 412 (45), 6252-6260, 2011
122011
Novel computational techniques for mapping and classification of Next-Generation Sequencing data
K Břinda
Phd Thesis, Université Paris-Est, 2016
112016
Dynamic read mapping and online consensus calling for better variant detection
K Břinda, V Boeva, G Kucherov
arXiv preprint arXiv:1605.09070, 2016
92016
Balances of m-bonacci words
K Břinda, E Pelantová, O Turek
Fundamenta Informaticae 132 (1), 33-61, 2014
52014
Simplitigs as an efficient and scalable representation of de Bruijn graphs
K Břinda, M Baym, G Kucherov
bioRxiv, 2020
32020
Ococo: an online consensus caller
K Brinda, V Boeva, G Kucherov
arXiv preprint arXiv:1712.01146, 2017
32017
Languages of lossless seeds
K Břinda
Proceedings of the 14th International Conference on Automata and Formal …, 2014
32014
Lossless seeds for approximate string matching
K Břinda
MS Thesis, Czech Technical University, 2013
32013
Abelian complexity of infinite words
K Břinda
BS Thesis, Czech Technical University 17, 25, 2011
2*2011
Prophyle: a phylogeny-based metagenomic classifier using the burrows-wheeler transform
K Brinda, K Salikhov, S Pignotti, G Kucherov
Poster at HiTSeq 2017, 2017
12017
Abelian complexity of infinite words and Abelian return words
K Brinda
Research project, Czech Technical University in Prague, 2012
12012
Using genetic distance from archived samples for the prediction of antibiotic resistance in Escherichia coli
DR MacFadden, B Coburn, K Břinda, A Corbeil, N Daneman, D Fisman, ...
Antimicrobial Agents and Chemotherapy 64 (5), 2020
2020
Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use
DR MacFadden, B Coburn, K Brinda, A Corbeil, N Daneman, D Fisman, ...
2019
Dynamic mappers of NGS reads
K Brinda, V Boeva, G Kucherov
Invited Talks, 10, 2014
2014
INTERNETOVÉ MAPY PRO NEVIDOMÉ UŽIVATELE
P Červenka, R Seifert, K Břinda, A Vitinger
2014
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