| Whole-genome and epigenomic landscapes of etiologically distinct subtypes of cholangiocarcinoma A Jusakul, I Cutcutache, CH Yong, JQ Lim, MN Huang, N Padmanabhan, ... Cancer discovery 7 (10), 1116-1135, 2017 | 801 | 2017 |
| Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs Trends in biochemical sciences 39 (9), 381-399, 2014 | 603 | 2014 |
| Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk Cell reports 3 (4), 1093-1104, 2013 | 378 | 2013 |
| Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading HK MacAlpine, R Gordân, SK Powell, AJ Hartemink, DM MacAlpine Genome research 20 (2), 201-211, 2010 | 331 | 2010 |
| Protein–DNA binding: complexities and multi-protein codes T Siggers, R Gordân Nucleic acids research 42 (4), 2099-2111, 2014 | 283 | 2014 |
| Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex JL Boyd, SL Skove, JP Rouanet, LJ Pilaz, T Bepler, R Gordân, GA Wray, ... Current Biology 25 (6), 772-779, 2015 | 281 | 2015 |
| Quantitative modeling of transcription factor binding specificities using DNA shape T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ... Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015 | 266 | 2015 |
| Survey of variation in human transcription factors reveals prevalent DNA binding changes LA Barrera, A Vedenko, JV Kurland, JM Rogers, SS Gisselbrecht, ... Science 351 (6280), 1450-1454, 2016 | 202 | 2016 |
| Distinguishing direct versus indirect transcription factor–DNA interactions R Gordân, AJ Hartemink, ML Bulyk Genome research 19 (11), 2090-2100, 2009 | 175 | 2009 |
| Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights R Gordân, KF Murphy, RP McCord, C Zhu, A Vedenko, ML Bulyk Genome biology 12, 1-18, 2011 | 143 | 2011 |
| TFBSshape: a motif database for DNA shape features of transcription factor binding sites L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs Nucleic acids research 42 (D1), D148-D155, 2014 | 139 | 2014 |
| A nucleosome-guided map of transcription factor binding sites in yeast L Narlikar, R Gordân, AJ Hartemink PLoS computational biology 3 (11), e215, 2007 | 128 | 2007 |
| Protein− DNA binding in the absence of specific base-pair recognition A Afek, JL Schipper, J Horton, R Gordân, DB Lukatsky Proceedings of the National Academy of Sciences 111 (48), 17140-17145, 2014 | 120 | 2014 |
| DNA mismatches reveal conformational penalties in protein–DNA recognition A Afek, H Shi, A Rangadurai, H Sahay, A Senitzki, S Xhani, M Fang, ... Nature 587 (7833), 291-296, 2020 | 108 | 2020 |
| Inkjet-printed point-of-care immunoassay on a nanoscale polymer brush enables subpicomolar detection of analytes in blood DY Joh, AM Hucknall, Q Wei, KA Mason, ML Lund, CM Fontes, RT Hill, ... Proceedings of the National Academy of Sciences 114 (34), E7054-E7062, 2017 | 96 | 2017 |
| Sequence specificity incompletely defines the genome-wide occupancy of Myc J Guo, T Li, J Schipper, KA Nilson, FK Fordjour, JJ Cooper, R Gordân, ... Genome biology 15, 1-14, 2014 | 87 | 2014 |
| Short tandem repeats bind transcription factors to tune eukaryotic gene expression CA Horton, AM Alexandari, MGB Hayes, E Marklund, JM Schaepe, ... Science 381 (6664), eadd1250, 2023 | 81 | 2023 |
| Stability selection for regression-based models of transcription factor–DNA binding specificity F Mordelet, J Horton, AJ Hartemink, BE Engelhardt, R Gordân Bioinformatics 29 (13), i117-i125, 2013 | 80 | 2013 |
| Informative priors based on transcription factor structural class improve de novo motif discovery L Narlikar, R Gordân, U Ohler, AJ Hartemink Bioinformatics 22 (14), e384-e392, 2006 | 80 | 2006 |
| Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi EM Medina, JJ Turner, R Gordan, JM Skotheim, NE Buchler Elife 5, e09492, 2016 | 65 | 2016 |
