Daniel McDonald

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2018
Позовавания	86424	65960
h-индекс	59	57
i10-индекс	100	95

15000

7500

3750

11250

2011201220132014201520162017201820192020202120222023221 754 1510 2424 3703 4997 6338 8040 10453 12558 14461 14362 6022

Публичен достъп

Преглед на всички

99 статии

2 статии

налични

неналични

Въз основа на изисквания при финансирането

Съавтори

Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDПотвърден имейл адрес: ucsd.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoПотвърден имейл адрес: ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityПотвърден имейл адрес: nau.edu
Yoshiki Vázquez-BaezaBiomeSenseПотвърден имейл адрес: biomesense.com
Pieter C DorresteinUCSDПотвърден имейл адрес: ucsd.edu
Qiyun ZhuArizona State UniversityПотвърден имейл адрес: asu.edu
Zhenjiang Zech XuПотвърден имейл адрес: ucsd.edu
Jesse RR ZaneveldAssistant Professor, Division of Biological Sciences, University of Washington, BothellПотвърден имейл адрес: uw.edu
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiПотвърден имейл адрес: mssm.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthПотвърден имейл адрес: hsph.harvard.edu
Julia GoodrichGraduate Student, Cornell UniversityПотвърден имейл адрес: cornell.edu
Anupriya TripathiUniversity of California San DiegoПотвърден имейл адрес: ucsd.edu
Jon G SandersPostdoctoral Fellow, Cornell universityПотвърден имейл адрес: cornell.edu
Jai Ram RideoutOne CodexПотвърден имейл адрес: onecodex.com
Se Jin SongUniversity of California San DiegoПотвърден имейл адрес: ucsd.edu
Dan KnightsUniversity of MinnesotaПотвърден имейл адрес: umn.edu
Embriette HydeFreelance Science Writer and Research ConsultantПотвърден имейл адрес: drhydenotjekyll.com
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandПотвърден имейл адрес: uq.edu.au
William A WaltersPost-doc, Cornell UniversityПотвърден имейл адрес: colorado.edu
Jack A GilbertUniversity of California, San DiegoПотвърден имейл адрес: ucsd.edu

Следене

Daniel McDonald

American Gut, Knight Lab, Department of Pediatrics, UCSD

Потвърден имейл адрес: ucsd.edu - Начална страница

microbiome citizen science


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	31978	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	9331	2019
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	9143	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	7593	2013
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012	4800	2012
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	2864	2014
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2167	2012
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	1821	2017
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	1179	2018
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), e00191-16, 2017	1113	2017
Strains, functions and dynamics in the expanded Human Microbiome Project J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ... Nature 550 (7674), 61-66, 2017	983	2017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	904	2018
Dynamics of the human gut microbiome in inflammatory bowel disease J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ... Nature microbiology 2 (5), 1-7, 2017	901	2017
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1, 1-6, 2012	731	2012
Forensic identification using skin bacterial communities N Fierer, CL Lauber, N Zhou, D McDonald, EK Costello, R Knight Proceedings of the National Academy of Sciences 107 (14), 6477-6481, 2010	705	2010
Regional variation limits applications of healthy gut microbiome reference ranges and disease models Y He, W Wu, HM Zheng, P Li, D McDonald, HF Sheng, MX Chen, ... Nature medicine 24 (10), 1532-1535, 2018	588	2018
GABA-modulating bacteria of the human gut microbiota P Strandwitz, KH Kim, D Terekhova, JK Liu, A Sharma, J Levering, ... Nature microbiology 4 (3), 396-403, 2019	566	2019
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014	565	2014
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), e00031-18, 2018	535	2018
The Integrative Human Microbiome Project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease IHMPHMPRN Consortium Cell Host Microbe 16 (3), 276-89, 2014	441	2014

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