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Diogo M. Ribeiro
Diogo M. Ribeiro
Bioinformatics Researcher, University of Lausanne
Verified email at unil.ch - Homepage
Title
Cited by
Cited by
Year
Comparative genomics of the major parasitic worms
International Helminth Genomes Consortium
Nature genetics 51 (1), 163, 2019
3712019
The genomic basis of parasitism in the Strongyloides clade of nematodes
VL Hunt, IJ Tsai, A Coghlan, AJ Reid, N Holroyd, BJ Foth, A Tracey, ...
Nature genetics 48 (3), 299, 2016
2392016
Efficient phasing and imputation of low-coverage sequencing data using large reference panels
S Rubinacci, DM Ribeiro, RJ Hofmeister, O Delaneau
Nature Genetics 53 (1), 120-126, 2021
2112021
Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs
DM Ribeiro, A Zanzoni, A Cipriano, R Delli Ponti, L Spinelli, M Ballarino, ...
Nucleic acids research 46 (2), 917-928, 2018
872018
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome
E Porcu, MC Sadler, K Lepik, C Auwerx, AR Wood, A Weihs, ...
Nature Communications 12 (1), 1-9, 2021
692021
The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion
HM Bennett, HP Mok, E Gkrania-Klotsas, IJ Tsai, EJ Stanley, NM Antoun, ...
Genome biology 15 (11), 510, 2014
582014
Understanding protein multifunctionality: from short linear motifs to cellular functions
A Zanzoni, DM Ribeiro, C Brun
Cellular and Molecular Life Sciences, 1-6, 2019
372019
MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni
AV Protasio, S van Dongen, J Collins, L Quintais, DM Ribeiro, F Sessler, ...
PLoS neglected tropical diseases 11 (5), e0005559, 2017
352017
MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins
DM Ribeiro, G Briere, B Bely, L Spinelli, C Brun
Nucleic acids research 47 (D1), D398-D402, 2019
322019
Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
RJ Hofmeister*, DM Ribeiro*, S Rubinacci*, O Delaneau
Nature Genetics, 1-7, 2023
302023
The molecular basis, genetic control and pleiotropic effects of local gene co-expression
DM Ribeiro, S Rubinacci, A Ramisch, RJ Hofmeister, ET Dermitzakis, ...
Nature Communications 12 (1), 1-13, 2021
252021
Post-transcriptional regulatory patterns revealed by protein-RNA interactions
A Zanzoni, L Spinelli, DM Ribeiro, GG Tartaglia, C Brun
Scientific reports 9 (1), 1-13, 2019
242019
Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis
D M Ribeiro, C Ziyani, O Delaneau
Communications biology 5 (1), 1-11, 2022
102022
The role of 3′ UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization
DM Ribeiro, A Prod’homme, A Teixeira, A Zanzoni, C Brun
Nucleic Acids Research 48 (12), 6491-6502, 2020
72020
Parent-of-Origin inference for biobanks
RJ Hofmeister, S Rubinacci, DM Ribeiro, A Buil, Z Kutalik, O Delaneau
Nature Communications 13 (1), 1-15, 2022
6*2022
Genetic variation in cis-regulatory domains suggests cell type-specific regulatory mechanisms in immunity
D Avalos, G Rey, DM Ribeiro, A Ramisch, ET Dermitzakis, O Delaneau
Communications Biology 6 (1), 335, 2023
4*2023
Non-coding rare variant associations with blood traits on 166,740 UK Biobank genomes
D Ribeiro, O Delaneau
bioRxiv, 2023.12. 01.569422, 2023
12023
Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications
MC Sadler, A Apostolov, C Cevallos, DM Ribeiro, RB Altman, Z Kutalik
medRxiv, 2024.04. 06.24305415, 2024
2024
Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line
C Ziyani, O Delaneau, DM Ribeiro
Communications Biology 6 (1), 563, 2023
2023
Temporal variation of regulatory organization based on longitudinal RNA-seq data in twins
A Ramisch, D Ribeiro, JS Moustafa, G Leday, Y Jiao, G Nicholson, ...
EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 729-730, 2020
2020
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