David Penny
David Penny
Professor of theoretical Biology, Massey University
Потвърден имейл адрес: massey.ac.nz
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
W Martin, T Rujan, E Richly, A Hansen, S Cornelsen, T Lins, D Leister, ...
Proceedings of the National Academy of Sciences 99 (19), 12246-12251, 2002
Recovering evolutionary trees under a more realistic model of sequence evolution.
PJ Lockhart, MA Steel, MD Hendy, D Penny
Molecular biology and evolution 11 (4), 605-612, 1994
A framework for the quantitative study of evolutionary trees
MD Hendy, D Penny
Systematic zoology 38 (4), 297-309, 1989
The modern molecular clock
L Bromham, D Penny
Nature Reviews Genetics 4 (3), 216-224, 2003
Branch and bound algorithms to determine minimal evolutionary trees
MD Hendy, D Penny
Mathematical biosciences 59 (2), 277-290, 1982
Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence
A Cooper, D Penny
Science 275 (5303), 1109-1113, 1997
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria
E Lerat, V Daubin, NA Moran
PLoS biology 1 (1), e19, 2003
Genome-scale phylogeny and the detection of systematic biases
MJ Phillips, F Delsuc, D Penny
Molecular biology and evolution 21 (7), 1455-1458, 2004
Distributions of tree comparison metrics—some new results
MA Steel, D Penny
Systematic biology 42 (2), 126-141, 1993
A genome phylogeny for mitochondria among α-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
C Esser, N Ahmadinejad, C Wiegand, C Rotte, F Sebastiani, ...
Molecular biology and evolution 21 (9), 1643-1660, 2004
Parsimony, likelihood, and the role of models in molecular phylogenetics
M Steel, D Penny
Molecular biology and evolution 17 (6), 839-850, 2000
The use of tree comparison metrics
D Penny, MD Hendy
Systematic Zoology 34 (1), 75-82, 1985
Modern humans did not admix with Neanderthals during their range expansion into Europe
M Currat, L Excoffier
PLoS biology 2 (12), e421, 2004
The path from the RNA world
AM Poole, DC Jeffares, D Penny
Journal of Molecular Evolution 46, 1-17, 1998
Relics from the RNA world
DC Jeffares, AM Poole, D Penny
Journal of molecular evolution 46, 18-36, 1998
Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution
KE Slack, CM Jones, T Ando, GL Harrison, RE Fordyce, U Arnason, ...
Molecular biology and evolution 23 (6), 1144-1155, 2006
Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA.
RE Hickson, C Simon, A Cooper, GS Spicer, J Sullivan, D Penny
Molecular biology and evolution 13 (1), 150-169, 1996
The biology of intron gain and loss
DC Jeffares, T Mourier, D Penny
TRENDS in Genetics 22 (1), 16-22, 2006
The root of the mammalian tree inferred from whole mitochondrial genomes
MJ Phillips, D Penny
Molecular phylogenetics and evolution 28 (2), 171-185, 2003
Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences
D Penny, LR Foulds, MD Hendy
Nature 297 (5863), 197-200, 1982
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