Следене
Tom Ferrin
Tom Ferrin
Professor of Pharmaceutical Chemistry, UCSF
Потвърден имейл адрес: cgl.ucsf.edu - Начална страница
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Позовавания
Позовавания
Година
UCSF Chimera—a visualization system for exploratory research and analysis
EF Pettersen, TD Goddard, CC Huang, GS Couch, DM Greenblatt, ...
Journal of computational chemistry 25 (13), 1605-1612, 2004
427042004
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ...
Protein science 30 (1), 70-82, 2021
45722021
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ...
Protein science 27 (1), 14-25, 2018
33722018
A geometric approach to macromolecule-ligand interactions
ID Kuntz, JM Blaney, SJ Oatley, R Langridge, TE Ferrin
Journal of molecular biology 161 (2), 269-288, 1982
31391982
The MIDAS display system
TE Ferrin, CC Huang, LE Jarvis, R Langridge
Journal of molecular graphics 6 (1), 13-27, 1988
12241988
Visualizing density maps with UCSF Chimera
TD Goddard, CC Huang, TE Ferrin
Journal of structural biology 157 (1), 281-287, 2007
8792007
Tools for integrated sequence-structure analysis with UCSF Chimera
EC Meng, EF Pettersen, GS Couch, CC Huang, TE Ferrin
BMC bioinformatics 7, 1-10, 2006
6732006
UCSF Chimera, MODELLER, and IMP: an integrated modeling system
Z Yang, K Lasker, D Schneidman-Duhovny, B Webb, CC Huang, ...
Journal of structural biology 179 (3), 269-278, 2012
6462012
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12, 1-14, 2011
5962011
Designed divergent evolution of enzyme function
Y Yoshikuni, TE Ferrin, JD Keasling
Nature 440 (7087), 1078-1082, 2006
5302006
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene
DL Kroetz, C Pauli-Magnus, LM Hodges, CC Huang, M Kawamoto, ...
Pharmacogenetics and Genomics 13 (8), 481-494, 2003
4982003
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt
PloS one 4 (2), e4345, 2009
4632009
ModBase, a database of annotated comparative protein structure models, and associated resources
U Pieper, BM Webb, DT Barkan, D Schneidman-Duhovny, A Schlessinger, ...
Nucleic acids research 39 (suppl_1), D465-D474, 2010
3452010
Evolutionary conservation predicts function of variants of the human organic cation transporter, OCT1
Y Shu, MK Leabman, B Feng, LM Mangravite, CC Huang, D Stryke, ...
Proceedings of the National Academy of Sciences 100 (10), 5902-5907, 2003
3402003
Real-time color graphics in studies of molecular interactions
R Langridge, TE Ferrin, ID Kuntz, ML Connolly
Science 211 (4483), 661-666, 1981
3201981
MODBASE, a database of annotated comparative protein structure models, and associated resources
U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ...
Nucleic acids research 32 (suppl_1), D217-D222, 2004
3042004
Chimera: an extensible molecular modeling application constructed using standard components
CC Huang, GS Couch, EF Pettersen, TE Ferrin
Pacific symposium on biocomputing 1, 724, 1996
2861996
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells
D Stryke, M Kawamoto, CC Huang, SJ Johns, LA King, CA Harper, ...
Nucleic Acids Research 31 (1), 278-281, 2003
2822003
Natural variation in human membrane transporter genes reveals evolutionary and functional constraints
MK Leabman, CC Huang, J DeYoung, EJ Carlson, TR Taylor, ...
Proceedings of the National Academy of Sciences 100 (10), 5896-5901, 2003
2712003
Software extensions to UCSF chimera for interactive visualization of large molecular assemblies
TD Goddard, CC Huang, TE Ferrin
Structure 13 (3), 473-482, 2005
2652005
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Статии 1–20