| Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence … G Janbon, KL Ormerod, D Paulet, EJ Byrnes III, V Yadav, G Chatterjee, ... PLoS genetics 10 (4), e1004261, 2014 | 387 | 2014 |
| Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies X Li, D Fan, W Zhang, G Liu, L Zhang, L Zhao, X Fang, L Chen, Y Dong, ... Nature communications 6 (1), 8212, 2015 | 195 | 2015 |
| Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans CA Desjardins, C Giamberardino, SM Sykes, CH Yu, JL Tenor, Y Chen, ... Genome research 27 (7), 1207-1219, 2017 | 149 | 2017 |
| The Cryptococcus neoformans transcriptome at the site of human meningitis Y Chen, DL Toffaletti, JL Tenor, AP Litvintseva, C Fang, TG Mitchell, ... MBio 5 (1), 10.1128/mbio. 01087-13, 2014 | 108 | 2014 |
| Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level J Rhodes, CA Desjardins, SM Sykes, MA Beale, M Vanhove, ... Genetics 207 (1), 327-346, 2017 | 99 | 2017 |
| Genome evolution and innovation across the four major lineages of Cryptococcus gattii RA Farrer, CA Desjardins, S Sakthikumar, S Gujja, S Saif, Q Zeng, Y Chen, ... MBio 6 (5), 10.1128/mbio. 00868-15, 2015 | 97 | 2015 |
| Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus HL Liao, Y Chen, R Vilgalys PLoS Genetics 12 (10), e1006348, 2016 | 87 | 2016 |
| Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma–Pinus symbiosis: improved methodologies for assessing gene expression … HL Liao, Y Chen, TD Bruns, KG Peay, JW Taylor, S Branco, JM Talbot, ... Environmental microbiology 16 (12), 3730-3742, 2014 | 78 | 2014 |
| Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ... MBio 8 (2), 10.1128/mbio. 00166-17, 2017 | 76 | 2017 |
| A Young Drosophila Duplicate Gene Plays Essential Roles in Spermatogenesis by Regulating Several Y-Linked Male Fertility Genes Y Ding, L Zhao, S Yang, Y Jiang, Y Chen, R Zhao, Y Zhang, G Zhang, ... PLoS genetics 6 (12), e1001255, 2010 | 73 | 2010 |
| Comparative analyses of clinical and environmental populations of Cryptococcus neoformans in Botswana Y Chen, AP Litvintseva, AE Frazzitta, MR Haverkamp, L Wang, C Fang, ... Molecular ecology 24 (14), 3559-3571, 2015 | 69 | 2015 |
| Next generation multilocus sequence typing (NGMLST) and the analytical software program MLSTEZ enable efficient, cost-effective, high-throughput, multilocus sequencing typing Y Chen, AE Frazzitta, AP Litvintseva, C Fang, TG Mitchell, DJ Springer, ... Fungal Genetics and Biology 75, 64-71, 2015 | 42 | 2015 |
| Genotypic diversity and clinical outcome of cryptococcosis in renal transplant recipients in Brazil V Ponzio, Y Chen, AM Rodrigues, JL Tenor, DL Toffaletti, ... Emerging microbes & infections 8 (1), 119-129, 2019 | 29 | 2019 |
| Landscape of gene expression variation of natural isolates of Cryptococcus neoformans in response to biologically relevant stresses CH Yu, Y Chen, CA Desjardins, JL Tenor, DL Toffaletti, C Giamberardino, ... Microbial genomics 6 (1), e000319, 2020 | 27 | 2020 |
| Transcriptome analysis of different developmental stages of amphioxus reveals dynamic changes of distinct classes of genes during development KY Yang, Y Chen, Z Zhang, PKS Ng, WJ Zhou, Y Zhang, M Liu, J Chen, ... Scientific reports 6 (1), 23195, 2016 | 20 | 2016 |
| Independent origins of diploidy in Metarhizium RM Kepler, Y Chen, J Kilcrease, J Shao, SA Rehner Mycologia 108 (6), 1091-1103, 2016 | 17 | 2016 |
| Evolution of vertebrate central nervous system is accompanied by novel expression changes of duplicate genes Y Chen, Y Ding, Z Zhang, W Wang, JY Chen, N Ueno, B Mao Journal of Genetics and Genomics 38 (12), 577-584, 2011 | 10 | 2011 |
| Efficient, cost-effective, high-throughput, multilocus sequencing typing (MLST) method, NGMLST, and the analytical software program MLSTEZ Y Chen, JR Perfect Genotyping: Methods and Protocols, 197-202, 2017 | 5 | 2017 |
| Female Urinary Microbiome Analysis and Artificial Intelligence Enhances the Infectious Diagnostic Yield in Precision Medicine. Microbiol D Baugher, AW Larsen, Y Chen, CR Icenhour, CA Valencia Infect. Dis 5, 1-8, 2021 | 1 | 2021 |
| RNA: an expanding view of function and evolution X Han, Y Chen, L Wang, W Fang, N Zhang, Q Zhu Evolutionary Bioinformatics 11, EBO. S38105, 2015 | 1 | 2015 |
