Zhong Wang
RNA-Seq: a revolutionary tool for transcriptomics
Z Wang, M Gerstein, M Snyder
Nature reviews genetics 10 (1), 57-63, 2009
The transcriptional landscape of the yeast genome defined by RNA sequencing
U Nagalakshmi, Z Wang, K Waern, C Shou, D Raha, M Gerstein, ...
Science 320 (5881), 1344-1349, 2008
Next-generation transcriptome assembly
JA Martin, Z Wang
Nature Reviews Genetics 12 (10), 671-682, 2011
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ...
Science 331 (6016), 463, 2011
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
DD Kang, J Froula, R Egan, Z Wang
PeerJ 3, e1165, 2015
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...
Nature biotechnology 30 (7), 693-700, 2012
A novel class of small RNAs in mouse spermatogenic cells
ST Grivna, E Beyret, Z Wang, H Lin
Genes & development 20 (13), 1709-1714, 2006
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
DD Kang, F Li, E Kirton, A Thomas, R Egan, H An, Z Wang
PeerJ 7, e7359, 2019
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing
SP Gordon, E Tseng, A Salamov, J Zhang, X Meng, Z Zhao, D Kang, ...
PloS one 10 (7), e0132628, 2015
Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
W Shi, CD Moon, SC Leahy, D Kang, J Froula, S Kittelmann, C Fan, ...
Genome research 24 (9), 1517-1525, 2014
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
J Martin, VM Bruno, Z Fang, X Meng, M Blow, T Zhang, G Sherlock, ...
BMC genomics 11 (1), 663, 2010
Nanos maintains germline stem cell self-renewal by preventing differentiation
Z Wang, H Lin
Science 303 (5666), 2016-2019, 2004
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
S He, O Wurtzel, K Singh, JL Froula, S Yilmaz, SG Tringe, Z Wang, ...
Nature Methods 7 (10), 807-812, 2010
Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
VM Bruno, Z Wang, SL Marjani, GM Euskirchen, J Martin, G Sherlock, ...
Genome research 20 (10), 1451-1458, 2010
Close association of RNA polymerase II and many transcription factors with Pol III genes
D Raha, Z Wang, Z Moqtaderi, L Wu, G Zhong, M Gerstein, K Struhl, ...
Proceedings of the National Academy of Sciences 107 (8), 3639-3644, 2010
Regulatory relationship among piwi, pumilio, and bag-of-marbles in Drosophila germline stem cell self-renewal and differentiation
A Szakmary, DN Cox, Z Wang, H Lin
Current biology 15 (2), 171-178, 2005
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
SC Clark, R Egan, PI Frazier, Z Wang
Bioinformatics 29 (4), 435-443, 2013
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
H Nordberg, K Bhatia, K Wang, Z Wang
Bioinformatics 29 (23), 3014-3019, 2013
De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
SM Gross, JA Martin, J Simpson, MJ Abraham-Juarez, Z Wang, A Visel
BMC genomics 14 (1), 1-14, 2013
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