Alan A Chen

Получаване на мой собствен потребителски профил

Позовавания

	Всички	От 2018
Позовавания	1139	583
h-индекс	15	12
i10-индекс	17	16

180

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Публичен достъп

Преглед на всички

23 статии

2 статии

налични

неналични

Въз основа на изисквания при финансирането

Съавтори

Angel E GarciaCenter for Non Linear Studies, Los Alamos National LaboratoryПотвърден имейл адрес: lanl.gov
Srivathsan RanganathanOHSUПотвърден имейл адрес: ohsu.edu
Rohit V. PappuGene K. Beare Distinguished Professor of Biomedical Engineering, Washington University in St. LouisПотвърден имейл адрес: wustl.edu
jia shengUniversity at Albany, SUNYПотвърден имейл адрес: albany.edu
Sweta VangavetiThe RNA Institute, SUNY, AlbanyПотвърден имейл адрес: albany.edu
Julius B. LucksProfessor, Northwestern UniversityПотвърден имейл адрес: northwestern.edu
Parisa EbrahimiПотвърден имейл адрес: albany.edu
Angela M YuUniversity of WashingtonПотвърден имейл адрес: uw.edu
Scott TenenbaumProfessor of Nanobioscience, College of Nanoscale Science and Engineering, SUNY-PolytechnicПотвърден имейл адрес: sunypoly.edu
Ken HalvorsenRNA Institute, University at AlbanyПотвърден имейл адрес: albany.edu
Lorenzo BarontiHelmholtz Zentrum MünchenПотвърден имейл адрес: helmholtz-muenchen.de
Katja PetzoldAssociate Professor @ Karolinska Institutet, Stockholm, SwedenПотвърден имейл адрес: ki.se
Mehmet V YigitState University of New York at AlbanyПотвърден имейл адрес: albany.edu
Kyle E. WattersAssociate Director, Arbor BiotechnologiesПотвърден имейл адрес: arbor.bio
Fusheng ShenPh.D. Candidate of Chemistry, University at AlbanyПотвърден имейл адрес: albany.edu
Maria Basanta Sanchez *The RNA Institute, University at Albany, NYПотвърден имейл адрес: albany.edu
Nathan BakerMicrosoftПотвърден имейл адрес: microsoft.com
Marcelo MaruchoAssociate Professor of Physics, Universidad de Texas at San AntonioПотвърден имейл адрес: utsa.edu
Neil RobertsonUniversity at AlbanyПотвърден имейл адрес: albany.edu
Judith SchlagnitweitCNRS, CRMN LyonПотвърден имейл адрес: ens-lyon.fr

Следене

Alan A Chen

Associate Professor, Chemistry, SUNY Albany

Потвърден имейл адрес: albany.edu - Начална страница

Computational biophysics of RNA


Заглавие Сортиране по цитати Сортиране по година Сортиране по заглавие	Позовавания Позовавания	Година
High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations AA Chen, AE García Proceedings of the National Academy of Sciences 110 (42), 16820-16825, 2013	265	2013
Parameters of monovalent ions in the AMBER-99 forcefield: Assessment of inaccuracies and proposed improvements AA Chen, RV Pappu The Journal of Physical Chemistry B 111 (41), 11884-11887, 2007	165	2007
Quantitative characterization of ion pairing and cluster formation in strong 1: 1 electrolytes AA Chen, RV Pappu The Journal of Physical Chemistry B 111 (23), 6469-6478, 2007	129	2007
Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop AA Chen, DE Draper, RV Pappu Journal of molecular biology 390 (4), 805-819, 2009	76	2009
Simulations of RNA interactions with monovalent ions AA Chen, M Marucho, NA Baker, RV Pappu Methods in enzymology 469, 411-432, 2009	55	2009
Complex thermodynamic behavior of single-stranded nucleic acid adsorption to graphene surfaces SV Ranganathan, K Halvorsen, CA Myers, NM Robertson, MV Yigit, ... Langmuir 32 (24), 6028-6034, 2016	49	2016
Advances in RNA molecular dynamics: a simulator's guide to RNA force fields S Vangaveti, SV Ranganathan, AA Chen Wiley Interdisciplinary Reviews: RNA, 2016	46	2016
Free-energy landscape of a hyperstable RNA tetraloop JC Miner, AA Chen, AE García Proceedings of the National Academy of Sciences 113 (24), 6665-6670, 2016	42	2016
Base-pair conformational switch modulates miR-34a targeting of Sirt1 mRNA L Baronti, I Guzzetti, P Ebrahimi, SF Sandoz, E Steiner, J Schlagnitweit, ... Nature 583 (7814), 139-144, 2020	41	2020
Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur, V Gopalan, AA Chen, ... Molecular Cell 81 (4), 870-883. e10, 2021	39	2021
The Essential Role of Stacking Adenines in a Two-Base-Pair RNA Kissing Complex W Stephenson, PN Asare-Okai, AA Chen, S Keller, R Santiago, ... Journal of the American Chemical Society 135 (15), 5602-5611, 2013	38	2013
Using in-cell SHAPE-Seq and simulations to probe structure–function design principles of RNA transcriptional regulators MK Takahashi, KE Watters, PM Gasper, TR Abbott, PD Carlson, AA Chen, ... RNA 22 (6), 920-933, 2016	36	2016
Mechanism of enhanced mechanical stability of a minimal RNA kissing complex elucidated by nonequilibrium molecular dynamics simulations AA Chen, AE García Proceedings of the National Academy of Sciences 109 (24), E1530-E1539, 2012	24	2012
Synthesis, base pairing and structure studies of geranylated RNA R Wang, S Vangaveti, SV Ranganathan, M Basanta-Sanchez, ... Nucleic acids research 44 (13), 6036-6045, 2016	22	2016
Synthesis and base pairing studies of geranylated 2-thiothymidine, a natural variant of thymidine R Wang, SV Ranganathan, M Basanta-Sanchez, F Shen, A Chen, ... Chemical Communications 51 (91), 16369-16372, 2015	18	2015
A two-dimensional replica-exchange molecular dynamics method for simulating RNA folding using sparse experimental restraints P Ebrahimi, S Kaur, L Baronti, K Petzold, AA Chen Methods 162, 96-107, 2019	12	2019
CoSIMS: An Optimized Trajectory-Based Collision Simulator for Ion Mobility Spectrometry CA Myers, RJ D’Esposito, D Fabris, SV Ranganathan, AA Chen The Journal of Physical Chemistry B 123 (20), 4347-4357, 2019	10	2019
Computationally reconstructing cotranscriptional RNA folding pathways from experimental data reveals rearrangement of non-native folding intermediates MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur, V Gopalan, AA Chen, ... Molecular cell 81 (4), 870, 2021	9*	2021
Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch L Cheng, EN White, NL Brandt, MY Angela, AA Chen, JB Lucks Nucleic Acids Research, 10.1093/nar/gkac102, 2022	8	2022
Cobalt-based paramagnetic probe to study RNA-protein interactions by NMR LM Seebald, CM DeMott, S Ranganathan, PN Asare-Okai, A Glazunova, ... Journal of Inorganic Biochemistry 170, 202-208, 2017	8	2017

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