| The origins of SARS-CoV-2: A critical review EC Holmes, SA Goldstein, AL Rasmussen, DL Robertson, ... Cell 184 (19), 4848-4856, 2021 | 461 | 2021 |
| Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families JL Geoghegan, S Duchêne, EC Holmes PLoS pathogens 13 (2), e1006215, 2017 | 217 | 2017 |
| The phylogenomics of evolving virus virulence JL Geoghegan, EC Holmes Nature Reviews Genetics 19 (12), 756-769, 2018 | 178 | 2018 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 173 | 2021 |
| Predicting virus emergence amid evolutionary noise JL Geoghegan, EC Holmes Open biology 7 (10), 170189, 2017 | 166 | 2017 |
| Virological factors that increase the transmissibility of emerging human viruses JL Geoghegan, M Senior, Alistair, F Di Giallonardo, EC Holmes Proceedings of the National Academy of Science in the USA, 2016 | 138 | 2016 |
| Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand JL Geoghegan, X Ren, M Storey, J Hadfield, L Jelley, S Jefferies, ... Nature communications 11 (1), 6351, 2020 | 128 | 2020 |
| Population-epigenetic models of selection JL Geoghegan, HG Spencer Theoretical population biology 81 (3), 232-242, 2012 | 101 | 2012 |
| Transmission of severe acute respiratory syndrome coronavirus 2 during border quarantine and air travel, New Zealand (Aotearoa) N Eichler, C Thornley, T Swadi, T Devine, C McElnay, J Sherwood, ... Emerging infectious diseases 27 (5), 1274, 2021 | 83 | 2021 |
| How accurately can we assess zoonotic risk? M Wille, JL Geoghegan, EC Holmes PLoS biology 19 (4), e3001135, 2021 | 66 | 2021 |
| Genomic evidence of in-flight transmission of SARS-CoV-2 despite predeparture testing T Swadi, JL Geoghegan, T Devine, C McElnay, J Sherwood, P Shoemack, ... Emerging infectious diseases 27 (3), 687, 2021 | 66 | 2021 |
| The peril and promise of integrons: beyond antibiotic resistance TM Ghaly, JL Geoghegan, SG Tetu, MR Gillings Trends in microbiology 28 (6), 455-464, 2020 | 66 | 2020 |
| Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam JL Geoghegan, LV Tan, D Kühnert, RA Halpin, X Lin, A Simenauer, ... Journal of virology 89 (17), 8871-8879, 2015 | 64 | 2015 |
| Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus BD Dalziel, K Huang, JL Geoghegan, N Arinaminpathy, EJ Dubovi, ... PLOS Pathogens 10 (10), e1004455, 2014 | 63 | 2014 |
| Evolutionary virology at 40 JL Geoghegan, EC Holmes Genetics 210 (4), 1151-1162, 2018 | 58 | 2018 |
| Pathogen population bottlenecks and adaptive landscapes: overcoming the barriers to disease emergence JL Geoghegan, AM Senior, EC Holmes Proceedings of the Royal Society B: Biological Sciences 283 (1837), 20160727, 2016 | 58 | 2016 |
| A synthesis of bacterial and archaeal phenotypic trait data JS Madin, DA Nielsen, M Brbic, R Corkrey, D Danko, K Edwards, ... Scientific Data 7 (1), 170, 2020 | 56 | 2020 |
| Virological sampling of inaccessible wildlife with drones JL Geoghegan, V Pirotta, E Harvey, A Smith, JP Buchmann, M Ostrowski, ... Viruses 10 (6), 300, 2018 | 55 | 2018 |
| Transgenerational epigenetics Elsevier, 2014 | 55* | 2014 |
| Hidden diversity and evolution of viruses in market fish JL Geoghegan, F Di Giallonardo, K Cousins, M Shi, JE Williamson, ... Virus Evolution 4 (2), vey031, 2018 | 53 | 2018 |
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
