Parallel derivation of isogenic human primed and naive induced pluripotent stem cells S Kilens, D Meistermann, D Moreno, C Chariau, A Gaignerie, A Reignier, ... Nature communications 9 (1), 360, 2018 | 137 | 2018 |
Induction of human trophoblast stem cells from somatic cells and pluripotent stem cells G Castel, D Meistermann, B Bretin, J Firmin, J Blin, S Loubersac, ... Cell Reports 33 (8), 2020 | 132 | 2020 |
Integrated pseudotime analysis of human pre-implantation embryo single-cell transcriptomes reveals the dynamics of lineage specification D Meistermann, A Bruneau, S Loubersac, A Reignier, J Firmin, ... Cell Stem Cell 28 (9), 1625-1640. e6, 2021 | 130 | 2021 |
Combinations of cytochrome P450 gene polymorphisms enhancing the risk for sporadic colorectal cancer related to red meat consumption S Kury, B Buecher, S Robiou-du-Pont, C Scoul, V Sébille, H Colman, ... Cancer Epidemiology Biomarkers & Prevention 16 (7), 1460-1467, 2007 | 97 | 2007 |
Meneco, a topology-based gap-filling tool applicable to degraded genome-wide metabolic networks S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ... PLoS computational biology 13 (1), e1005276, 2017 | 88 | 2017 |
A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems M Budinich, J Bourdon, A Larhlimi, D Eveillard PloS one 12 (2), e0171744, 2017 | 55 | 2017 |
Dynamical analysis of α-Euclidean algorithms J Bourdon, B Daireaux, B Vallée Journal of Algorithms 44 (1), 246-285, 2002 | 38 | 2002 |
Size and path length of Patricia tries: dynamical sources context J Bourdon Random Structures & Algorithms 19 (3‐4), 289-315, 2001 | 34 | 2001 |
Generalized pattern matching statistics J Bourdon, B Vallée Mathematics and computer science II: algorithms, trees, combinatorics and …, 2002 | 33 | 2002 |
Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data M Razzaq, L Paulevé, A Siegel, J Saez-Rodriguez, J Bourdon, ... PLoS computational biology 14 (10), e1006538, 2018 | 31 | 2018 |
Temporal constraints of a gene regulatory network: Refining a qualitative simulation J Ahmad, J Bourdon, D Eveillard, J Fromentin, O Roux, C Sinoquet Biosystems 98 (3), 149-159, 2009 | 28 | 2009 |
Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment T Tonon, D Eveillard, S Prigent, J Bourdon, P Potin, C Boyen, A Siegel Omics: a journal of integrative biology 15 (12), 883-892, 2011 | 24* | 2011 |
Pattern matching statistics on correlated sources J Bourdon, B Vallée Latin American Symposium on Theoretical Informatics, 224-237, 2006 | 23 | 2006 |
A combinatorial approach to products of Pisot substitutions V Berthé, J Bourdon, T Jolivet, A Siegel Ergodic Theory and Dynamical Systems 36 (6), 1757-1794, 2016 | 19 | 2016 |
On the stack-size of general tries J Bourdon, M Nebel, B Vallée RAIRO-Theoretical Informatics and Applications 35 (2), 163-185, 2001 | 13 | 2001 |
Spatio-temporal analysis of human preimplantation development reveals dynamics of epiblast and trophectoderm D Meistermann, S Loubersac, A Reignier, J Firmin, VF Campion, S Kilens, ... bioRxiv, 604751, 2019 | 11 | 2019 |
Computing diverse boolean networks from phosphoproteomic time series data M Razzaq, R Kaminski, J Romero, T Schaub, J Bourdon, C Guziolowski Computational Methods in Systems Biology: 16th International Conference …, 2018 | 10 | 2018 |
Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs O Abdou-Arbi, S Lemosquet, JV Milgen, A Siegel, J Bourdon BMC systems biology 8, 1-26, 2014 | 10 | 2014 |
Integrating quantitative knowledge into a qualitative gene regulatory network J Bourdon, D Eveillard, A Siegel PLoS computational biology 7 (9), e1002157, 2011 | 10 | 2011 |
Generating discrete planes with substitutions V Berthé, J Bourdon, T Jolivet, A Siegel Combinatorics on Words: 9th International Conference, WORDS 2013, Turku …, 2013 | 9 | 2013 |