Kresten Lindorff-Larsen

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David E. ShawD. E. Shaw ResearchVerified email at deshaw.com
Stefano pianaResearch Fellow, DE Shaw ResearchVerified email at deshaw.com
Ron DrorStanford UniversityVerified email at stanford.edu
Michele VendruscoloProfessor of Biophysics, University of CambridgeVerified email at cam.ac.uk
Elena PapaleoDanish Cancer Society Research Center and Technical University of DenmarkVerified email at cancer.dk
Yong WangZhejiang UniversityVerified email at zju.edu.cn
Amelie SteinAssociate Professor, University of CopenhagenVerified email at bio.ku.dk
Wouter BoomsmaProfessor, Department of Computer Science, University of CopenhagenVerified email at di.ku.dk
Christopher DobsonUniversity of CambridgeVerified email at cam.ac.uk
Sandro BottaroPeptoneVerified email at peptone.io
Birthe B. KragelundProfessor of protein biophysics, University of CopenhagenVerified email at bio.ku.dk
Kaare TeilumDepartment of Biology, University of CopenhagenVerified email at bio.ku.dk
Jakob R. WintherLinderstøm-Lang Centre for Protein Science, Department of Biology, University of CopenhagenVerified email at bio.ku.dk
Robert BestSenior Investigator, National Institutes of HealthVerified email at helix.nih.gov
Sofie V NielsenPost doc, University of CopenhagenVerified email at ku.dk
Yibing ShanFounding member, D. E. Shaw ResearchVerified email at deshaw.com
Jesper Ferkinghoff-BorgAssociate Professor, Research Director, Novo Nordisk A/SVerified email at novonordisk.com
Lise ArlethProfessor in Experimental Biophysics, University of CopenhagenVerified email at nbi.ku.dk
Micha Ben Achim KunzeUniversity of CopenhagenVerified email at bio.ku.dk
Ramon CrehuetCientífic Titular, CSICVerified email at iqac.csic.es

Kresten Lindorff-Larsen

Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen

Verified email at bio.ku.dk

Protein Structure Protein Dynamics Biophysics Computational Biophysics Computational Biology


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Improved side‐chain torsion potentials for the Amber ff99SB protein force field K Lindorff‐Larsen, S Piana, K Palmo, P Maragakis, JL Klepeis, RO Dror, ... Proteins: Structure, Function, and Bioinformatics 78 (8), 1950-1958, 2010	4729	2010
Atomic-level characterization of the structural dynamics of proteins DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ... Science 330 (6002), 341-346, 2010	1839	2010
How fast-folding proteins fold K Lindorff-Larsen, S Piana, RO Dror, DE Shaw Science 334 (6055), 517, 2011	1811	2011
Long-timescale molecular dynamics simulations of protein structure and function JL Klepeis, K Lindorff-Larsen, RO Dror, DE Shaw Current opinion in structural biology 19 (2), 120-127, 2009	825	2009
How robust are protein folding simulations with respect to force field parameterization? S Piana, K Lindorff-Larsen, DE Shaw Biophysical journal 100 (9), L47-L49, 2011	787	2011
Simultaneous determination of protein structure and dynamics K Lindorff-Larsen, RB Best, MA DePristo, CM Dobson, M Vendruscolo Nature 433 (7022), 128-132, 2005	750	2005
Mapping long-range interactions in α-synuclein using spin-label NMR and ensemble molecular dynamics simulations MM Dedmon, K Lindorff-Larsen, J Christodoulou, M Vendruscolo, ... Journal of the American Chemical Society 127 (2), 476-477, 2005	734	2005
Systematic validation of protein force fields against experimental data K Lindorff-Larsen, P Maragakis, S Piana, MP Eastwood, RO Dror, ... PloS one 7 (2), e32131, 2012	705	2012
Millisecond-scale molecular dynamics simulations on Anton DE Shaw, RO Dror, JK Salmon, JP Grossman, KM Mackenzie, JA Bank, ... Proceedings of the conference on high performance computing networking …, 2009	636	2009
Promoting transparency and reproducibility in enhanced molecular simulations M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ... Nature methods 16 (8), 670-673, 2019	403	2019
Principles of conduction and hydrophobic gating in K+ channels MØ Jensen, DW Borhani, K Lindorff-Larsen, P Maragakis, V Jogini, ... Proceedings of the National Academy of Sciences 107 (13), 5833-5838, 2010	339	2010
Atomic-level description of ubiquitin folding S Piana, K Lindorff-Larsen, DE Shaw Proceedings of the National Academy of Sciences 110 (15), 5915-5920, 2013	338	2013
The role of protein loops and linkers in conformational dynamics and allostery E Papaleo, G Saladino, M Lambrughi, K Lindorff-Larsen, FL Gervasio, ... Chemical reviews 116 (11), 6391-6423, 2016	296	2016
Protein folding kinetics and thermodynamics from atomistic simulation S Piana, K Lindorff-Larsen, DE Shaw Proceedings of the National Academy of Sciences 109 (44), 17845-17850, 2012	291	2012
Structure and dynamics of an unfolded protein examined by molecular dynamics simulation K Lindorff-Larsen, N Trbovic, P Maragakis, S Piana, DE Shaw Journal of the American Chemical Society 134 (8), 3787-3791, 2012	259	2012
Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins P Maragakis, K Lindorff-Larsen, MP Eastwood, RO Dror, JL Klepeis, ... The Journal of Physical Chemistry B 112 (19), 6155-6158, 2008	225	2008
Cancer mutations of the tumor suppressor SPOP disrupt the formation of active, phase-separated compartments JJ Bouchard, JH Otero, DC Scott, E Szulc, EW Martin, N Sabri, D Granata, ... Molecular cell 72 (1), 19-36. e8, 2018	222	2018
Parallel protein-unfolding pathways revealed and mapped CF Wright, K Lindorff-Larsen, LG Randles, J Clarke Nature Structural & Molecular Biology 10 (8), 658-662, 2003	191	2003
Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein K Lindorff-Larsen, S Kristjansdottir, K Teilum, W Fieber, CM Dobson, ... Journal of the American Chemical Society 126 (10), 3291-3299, 2004	182	2004
Surprisingly high stability of barley lipid transfer protein, LTP1, towards denaturant, heat and proteases K Lindorff-Larsen, JR Winther FEBS letters 488 (3), 145-148, 2001	173	2001

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