| Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ... Applied and environmental microbiology 75 (7), 2046-2056, 2009 | 1008 | 2009 |
| Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice DE Fouts, HL Tyler, RT DeBoy, S Daugherty, Q Ren, JH Badger, ... PLoS genetics 4 (7), e1000141, 2008 | 360 | 2008 |
| Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvumstrains V Paralanov, J Lu, LB Duffy, DM Crabb, S Shrivastava, BA Methé, J Inman, ... BMC microbiology 12, 1-20, 2012 | 109 | 2012 |
| Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens C Risso, J Sun, K Zhuang, R Mahadevan, R DeBoy, W Ismail, ... BMC genomics 10, 1-19, 2009 | 101 | 2009 |
| Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene SA Schobel, KM Stucker, ML Moore, LJ Anderson, EK Larkin, J Shankar, ... Scientific reports 6 (1), 26311, 2016 | 96 | 2016 |
| Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes ME Bose, J He, S Shrivastava, MI Nelson, J Bera, RA Halpin, CD Town, ... Plos one 10 (3), e0120098, 2015 | 78 | 2015 |
| Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in Viet Nam JL Geoghegan, LV Tan, D Kühnert, RA Halpin, X Lin, A Simenauer, ... Journal of virology 89 (17), 8871-8879, 2015 | 66 | 2015 |
| Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens AM Ismail, T Cui, K Dommaraju, G Singh, S Dehghan, J Seto, ... Emerging microbes & infections 7 (1), 1-22, 2018 | 63 | 2018 |
| Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009 E Abernathy, M Chen, J Bera, S Shrivastava, E Kirkness, Q Zheng, ... Virology journal 10, 1-9, 2013 | 40 | 2013 |
| Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses SR Dominguez, S Shrivastava, A Berglund, Z Qian, LGB Goes, RA Halpin, ... Journal of General Virology 95 (4), 836-848, 2014 | 34 | 2014 |
| CharProtDB: a database of experimentally characterized protein annotations R Madupu, A Richter, RJ Dodson, L Brinkac, D Harkins, S Durkin, ... Nucleic acids research 40 (D1), D237-D241, 2012 | 32 | 2012 |
| Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P [6] strains circulating in Africa MM Nyaga, Y Tan, ML Seheri, RA Halpin, A Akopov, KM Stucker, ... Infection, Genetics and Evolution 63, 79-88, 2018 | 31 | 2018 |
| Wild-type measles viruses with non-standard genome lengths B Bankamp, C Liu, P Rivailler, J Bera, S Shrivastava, EF Kirkness, ... PloS one 9 (4), e95470, 2014 | 31 | 2014 |
| Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains S Shrivastava, V Puri, KA Dilley, E Ngouajio, J Shifflett, LM Oldfield, ... Scientific reports 8 (1), 15843, 2018 | 30 | 2018 |
| Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing K Li, S Shrivastava, A Brownley, D Katzel, J Bera, AT Nguyen, V Thovarai, ... Virology journal 9, 1-9, 2012 | 30 | 2012 |
| Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic Y Tan, BE Pickett, S Shrivastava, L Gresh, A Balmaseda, P Amedeo, L Hu, ... PLoS neglected tropical diseases 12 (7), e0006670, 2018 | 29 | 2018 |
| Towards viral genome annotation standards, report from the 2010 NCBI annotation workshop JR Brister, Y Bao, C Kuiken, EJ Lefkowitz, PL Mercier, R Leplae, ... Viruses 2 (10), 2258-2268, 2010 | 28 | 2010 |
| Pathema: a clade-specific bioinformatics resource center for pathogen research LM Brinkac, T Davidsen, E Beck, A Ganapathy, E Caler, RJ Dodson, ... Nucleic acids research 38 (suppl_1), D408-D414, 2010 | 22 | 2010 |
| Isolation and characterization of a novel gammaherpesvirus from a microbat cell line RS Shabman, S Shrivastava, T Tsibane, O Attie, A Jayaprakash, CE Mire, ... Msphere 1 (1), 10.1128/msphere. 00070-15, 2016 | 18 | 2016 |
| Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes ME Bose, S Shrivastava, J He, MI Nelson, J Bera, N Fedorova, R Halpin, ... PLoS One 14 (7), e0220057, 2019 | 14 | 2019 |
