| HADDOCK: a protein-protein docking approach based on biochemical or biophysical information C Dominguez, R Boelens, AMJJ Bonvin Journal of the American Chemical Society 125 (7), 1731-1737, 2003 | 3127 | 2003 |
| The HADDOCK2. 2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes GCP van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016 | 2135 | 2016 |
| The HADDOCK web server for data-driven biomolecular docking SJ De Vries, M Van Dijk, AMJJ Bonvin Nature protocols 5 (5), 883-897, 2010 | 1362 | 2010 |
| PRODIGY: a web server for predicting the binding affinity of protein–protein complexes LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone Bioinformatics 32 (23), 3676-3678, 2016 | 806 | 2016 |
| Refinement of protein structures in explicit solvent JP Linge, MA Williams, CAEM Spronk, AMJJ Bonvin, M Nilges Proteins: Structure, Function, and Bioinformatics 50 (3), 496-506, 2003 | 698 | 2003 |
| HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets SJ de Vries, ADJ van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ... Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007 | 666 | 2007 |
| The nisin–lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics STD Hsu, E Breukink, E Tischenko, MAG Lutters, B De Kruijff, R Kaptein, ... Nature structural & molecular biology 11 (10), 963-967, 2004 | 635 | 2004 |
| Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes CG Kalodimos, N Biris, AMJJ Bonvin, MM Levandoski, M Guennuegues, ... Science 305 (5682), 386-389, 2004 | 597 | 2004 |
| Plectasin, a fungal defensin, targets the bacterial cell wall precursor Lipid II T Schneider, T Kruse, R Wimmer, I Wiedemann, V Sass, U Pag, A Jansen, ... Science 328 (5982), 1168-1172, 2010 | 554 | 2010 |
| On the binding affinity of macromolecular interactions: daring to ask why proteins interact PL Kastritis, AMJJ Bonvin Journal of The Royal Society Interface 10 (79), 20120835, 2013 | 514 | 2013 |
| Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... Elife 3, e03430, 2014 | 510 | 2014 |
| The α‐to‐β conformational transition of Alzheimer's Aβ‐(1–42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of β … S Tomaselli, V Esposito, P Vangone, NAJ van Nuland, AMJJ Bonvin, ... ChemBioChem 7 (2), 257-267, 2006 | 478 | 2006 |
| Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR I Gelis, AMJJ Bonvin, D Keramisanou, M Koukaki, G Gouridis, ... Cell 131 (4), 756-769, 2007 | 452 | 2007 |
| Contacts-based prediction of binding affinity in protein–protein complexes A Vangone, AMJJ Bonvin eLife 4, e07454, 2015 | 420 | 2015 |
| Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 399 | 2015 |
| Flexible protein-protein docking AMJJ Bonvin Current opinion in structural biology 16 (2), 194-200, 2006 | 389 | 2006 |
| RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank AJ Nederveen, JF Doreleijers, W Vranken, Z Miller, CAEM Spronk, ... PROTEINS: Structure, Function, and Bioinformatics 59 (4), 662-672, 2005 | 370 | 2005 |
| 3D-DART: a DNA structure modelling server M Van Dijk, AMJJ Bonvin Nucleic acids research 37 (suppl 2), W235-W239, 2009 | 360 | 2009 |
| CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK SJ de Vries, AMJJ Bonvin PLoS One 6 (3), e17695, 2011 | 328 | 2011 |
| A structure‐based benchmark for protein–protein binding affinity PL Kastritis, IH Moal, H Hwang, Z Weng, PA Bates, AMJJ Bonvin, J Janin Protein Science 20 (3), 482-491, 2011 | 316 | 2011 |
Rolf BoelensUtrecht UniversityVerified email at uu.nl
