Jeff Nivala
Unfoldase-mediated protein translocation through an α-hemolysin nanopore
J Nivala, DB Marks, M Akeson
Nature biotechnology 31 (3), 247-250, 2013
CRISPR–Cas encoding of a digital movie into the genomes of a population of living bacteria
SL Shipman, J Nivala, JD Macklis, GM Church
Nature 547 (7663), 345-349, 2017
Molecular digital data storage using DNA
L Ceze, J Nivala, K Strauss
Nature Reviews Genetics 20 (8), 456-466, 2019
Molecular recordings by directed CRISPR spacer acquisition
SL Shipman, J Nivala, JD Macklis, GM Church
Science 353 (6298), aaf1175, 2016
Discrimination among protein variants using an unfoldase-coupled nanopore
J Nivala, L Mulroney, G Li, J Schreiber, M Akeson
ACS nano 8 (12), 12365-12375, 2014
Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array
PB Stranges, M Palla, S Kalachikov, J Nivala, M Dorwart, S Kumar, ...
Proceedings of the National Academy of Sciences 113 (44), E6749-E6756, 2016
Reversible thrombin detection by aptamer functionalized STING sensors
P Actis, A Rogers, J Nivala, B Vilozny, RA Seger, O Jejelowo, ...
Biosensors and Bioelectronics 26 (11), 4503-4507, 2011
Improvement of a potential anthrax therapeutic by computational protein design
SJ Wu, CB Eiben, JH Carra, I Huang, D Zong, P Liu, CT Wu, J Nivala, ...
Journal of Biological Chemistry 286 (37), 32586-32592, 2011
Spontaneous CRISPR loci generation in vivo by non-canonical spacer integration
J Nivala, SL Shipman, GM Church
Nature microbiology 3 (3), 310-318, 2018
Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
K Doroschak, K Zhang, M Queen, A Mandyam, K Strauss, L Ceze, ...
Nature communications 11 (1), 1-8, 2020
Multiplexed direct detection of barcoded protein reporters on a nanopore array
N Cardozo, K Zhang, K Doroschak, A Nguyen, Z Siddiqui, N Bogard, ...
Nature Biotechnology 40 (1), 42-46, 2022
Multiplex single-molecule kinetics of nanopore-coupled polymerases
M Palla, S Punthambaker, B Stranges, F Vigneault, J Nivala, D Wiegand, ...
ACS nano 15 (1), 489-502, 2020
Reconstructing transcriptional histories by CRISPR acquisition of retron-based genetic barcodes
S Bhattarai-Kline, E Lockshin, MG Schubert, J Nivala, G Church, ...
bioRxiv, 2021
Herding cats: Label-based approaches in protein translocation through nanopore sensors for single-molecule protein sequence analysis
K Motone, N Cardozo, J Nivala
Iscience 24 (9), 103032, 2021
Distinguishing Protein Domains and Folded States with Unfoldase-Mediated Nanopore Analysis
J Nivala, M Akeson
Biophysical Journal 106 (2), 214a, 2014
Designing nanopore-addressable proteins for multiplexable mammalian reporting systems
D Wilde, A Nguyen, J Nivala
Biophysical Journal 121 (3), 405a-406a, 2022
Synthetic DNA applications in information technology
LC Meiser, BH Nguyen, YJ Chen, J Nivala, K Strauss, L Ceze, RN Grass
Nature Communications 13 (1), 1-13, 2022
Doctoring Direct-to-Consumer Genetic Tests with DNA Spike-Ins
P Ney, A Bhattacharya, D Ward, L Ceze, T Kohno, J Nivala
bioRxiv, 2022
DNA Sequencing Flow Cells and the Security of the Molecular-Digital Interface
P Ney, L Organick, J Nivala, L Ceze, T Kohno
Proceedings on Privacy Enhancing Technologies 2021 (3), 413-432, 2021
A nanopore interface for high bandwidth DNA computing
K Zhang, YJ Chen, K Doroschak, K Strauss, L Ceze, G Seelig, J Nivala
bioRxiv, 2021
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