An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database JK Eng, AL McCormack, JR Yates Journal of the american society for mass spectrometry 5 (11), 976-989, 1994 | 8092 | 1994 |
The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5 F Hayashi, KD Smith, A Ozinsky, TR Hawn, EC Yi, DR Goodlett, JK Eng, ... Nature 410 (6832), 1099-1103, 2001 | 4894 | 2001 |
Direct analysis of protein complexes using mass spectrometry AJ Link, J Eng, DM Schieltz, E Carmack, GJ Mize, DR Morris, BM Garvik, ... Nature biotechnology 17 (7), 676-682, 1999 | 3103 | 1999 |
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ... Science 292 (5518), 929-934, 2001 | 2652 | 2001 |
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database JR Yates, JK Eng, AL McCormack, D Schieltz Analytical chemistry 67 (8), 1426-1436, 1995 | 1601 | 1995 |
Comet: an open‐source MS/MS sequence database search tool JK Eng, TA Jahan, MR Hoopmann Proteomics 13 (1), 22-24, 2013 | 1504 | 2013 |
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry DK Han, J Eng, H Zhou, R Aebersold Nature biotechnology 19 (10), 946-951, 2001 | 1194 | 2001 |
A common open representation of mass spectrometry data and its application to proteomics research PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ... Nature biotechnology 22 (11), 1459-1466, 2004 | 974 | 2004 |
Integrated genomic and proteomic analyses of gene expression in mammalian cells Q Tian, SB Stepaniants, M Mao, L Weng, MC Feetham, MJ Doyle, ... Molecular & Cellular Proteomics 3 (10), 960-969, 2004 | 970 | 2004 |
The peptideatlas project F Desiere, EW Deutsch, NL King, AI Nesvizhskii, P Mallick, J Eng, S Chen, ... Nucleic acids research 34 (suppl_1), D655-D658, 2006 | 944 | 2006 |
Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 … GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ... Proteomics 5 (13), 3226-3245, 2005 | 941 | 2005 |
A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010 | 857 | 2010 |
Complementary profiling of gene expression at the transcriptome and proteome levels in saccharomyces cerevisiae* S TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold Molecular & Cellular Proteomics 1 (4), 323-333, 2002 | 852 | 2002 |
A uniform proteomics MS/MS analysis platform utilizing open XML file formats A Keller, J Eng, N Zhang, X Li, R Aebersold Molecular systems biology 1 (1), 2005.0017, 2005 | 828 | 2005 |
A multidimensional chromatography technology for in-depth phosphoproteome analysis CP Albuquerque, MB Smolka, SH Payne, V Bafna, J Eng, H Zhou Molecular & Cellular Proteomics 7 (7), 1389-1396, 2008 | 665 | 2008 |
Development and validation of a spectral library searching method for peptide identification from MS/MS H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold Proteomics 7 (5), 655-667, 2007 | 627 | 2007 |
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), 2011 | 610 | 2011 |
Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases JR Yates, JK Eng, AL McCormack Analytical chemistry 67 (18), 3202-3210, 1995 | 530 | 1995 |
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ... Proteomics 5 (13), 3475-3490, 2005 | 468 | 2005 |
Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags SP Gygi, B Rist, TJ Griffin, J Eng, R Aebersold Journal of proteome research 1 (1), 47-54, 2002 | 460 | 2002 |