Ioan Andricioaei
Ioan Andricioaei
Professor of Chemistry, University of California, Irvine
Потвърден имейл адрес: uci.edu - Начална страница
On the calculation of entropy from covariance matrices of the atomic fluctuations
I Andricioaei, M Karplus
The Journal of Chemical Physics 115 (14), 6289-6292, 2001
Transient Hoogsteen base pairs in canonical duplex DNA
EN Nikolova, E Kim, AA Wise, PJ O’Brien, I Andricioaei, HM Al-Hashimi
Nature 470 (7335), 498-502, 2011
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble
AC Stelzer, AT Frank, JD Kratz, MD Swanson, MJ Gonzalez-Hernandez, ...
Nature chemical biology 7 (8), 553-559, 2011
Membrane protein structure, function, and dynamics: a perspective from experiments and theory
Z Cournia, TW Allen, I Andricioaei, B Antonny, D Baum, G Brannigan, ...
The Journal of membrane biology 248, 611-640, 2015
Generalized simulated annealing algorithms using Tsallis statistics: Application to conformational optimization of a tetrapeptide
I Andricioaei, JE Straub
Physical Review E 53 (4), R3055, 1996
Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition
AT Frank, AC Stelzer, HM Al-Hashimi, I Andricioaei
Nucleic acids research 37 (11), 3670-3679, 2009
On Monte Carlo and molecular dynamics methods inspired by Tsallis statistics: Methodology, optimization, and application to atomic clusters
I Andricioaei, JE Straub
The Journal of chemical physics 107 (21), 9117-9124, 1997
Conversion between three conformational states of integrin I domains with a C-terminal pull spring studied with molecular dynamics
M Jin, I Andricioaei, TA Springer
Structure 12 (12), 2137-2147, 2004
m1A and m1G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs
H Zhou, IJ Kimsey, EN Nikolova, B Sathyamoorthy, G Grazioli, J McSally, ...
Nature structural & molecular biology 23 (9), 803-810, 2016
Slowing down single-molecule trafficking through a protein nanopore reveals intermediates for peptide translocation
L Mereuta, M Roy, A Asandei, JK Lee, Y Park, I Andricioaei, T Luchian
Scientific reports 4 (1), 3885, 2014
A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed
L Salmon, G Bascom, I Andricioaei, HM Al-Hashimi
Journal of the American Chemical Society 135 (14), 5457-5466, 2013
Poly (amidoamine) dendrimers on lipid bilayers II: Effects of bilayer phase and dendrimer termination
CV Kelly, PR Leroueil, BG Orr, MM Banaszak Holl, I Andricioaei
The Journal of Physical Chemistry B 112 (31), 9346-9353, 2008
Smart darting monte carlo
I Andricioaei, JE Straub, AF Voter
The Journal of Chemical Physics 114 (16), 6994-7000, 2001
Dynamic distance disorder in proteins is caused by trapping
G Luo, I Andricioaei, XS Xie, M Karplus
The Journal of Physical Chemistry B 110 (19), 9363-9367, 2006
Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis
EA Dethoff, AL Hansen, C Musselman, ED Watt, I Andricioaei, ...
Biophysical journal 95 (8), 3906-3915, 2008
Poly (amidoamine) dendrimers on lipid bilayers I: Free energy and conformation of binding
CV Kelly, PR Leroueil, EK Nett, JM Wereszczynski, JR Baker Jr, BG Orr, ...
The Journal of Physical Chemistry B 112 (31), 9337-9345, 2008
Size, motion, and function of the SecY translocon revealed by molecular dynamics simulations with virtual probes
P Tian, I Andricioaei
Biophysical journal 90 (8), 2718-2730, 2006
Distant residues modulate conformational opening in SARS-CoV-2 spike protein
D Ray, L Le, I Andricioaei
Proceedings of the National Academy of Sciences 118 (43), e2100943118, 2021
Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings
C Musselman, SW Pitt, K Gulati, LL Foster, I Andricioaei, HM Al-Hashimi
Journal of biomolecular NMR 36, 235-249, 2006
Repetitive pulling catalyzes co-translocational unfolding of barnase during import through a mitochondrial pore
P Tian, I Andricioaei
Journal of molecular biology 350 (5), 1017-1034, 2005
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