Ryuji J Machida
Ryuji J Machida
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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut …
M Leray, JY Yang, CP Meyer, SC Mills, N Agudelo, V Ranwez, JT Boehm, ...
Frontiers in zoology 10, 1-14, 2013
GenBank is a reliable resource for 21st century biodiversity research
M Leray, N Knowlton, SL Ho, BN Nguyen, RJ Machida
Proceedings of the National Academy of Sciences 116 (45), 22651-22656, 2019
Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda)
RJ Machida, MU Miya, M Nishida, S Nishida
Marine Biotechnology 4, 406-417, 2002
Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
RJ Machida, M Leray, SL Ho, N Knowlton
Scientific data 4 (1), 1-7, 2017
PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences
RJ Machida, N Knowlton
Public Library of Science 7 (9), e46180, 2012
Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on …
RJ Machida, MU Miya, M Nishida, S Nishida
Gene 332, 71-78, 2004
Evidence for the grazing hypothesis: Grazing reduces phytoplankton responses of the HNLC ecosystem to iron enrichment in the western subarctic pacific (SEEDS II)
A Tsuda, S Takeda, H Saito, J Nishioka, I Kudo, Y Nojiri, K Suzuki, ...
Journal of Oceanography 63, 983-994, 2007
Zooplankton diversity analysis through single-gene sequencing of a community sample
RJ Machida, Y Hashiguchi, M Nishida, S Nishida
Bmc Genomics 10, 1-7, 2009
Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority
JK Pearman, M Leray, R Villalobos, RJ Machida, ML Berumen, ...
Scientific reports 8 (1), 8090, 2018
Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods
R Böttger-Schnack, RJ Machida
Hydrobiologia 666, 111-125, 2011
MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
M Leray, SL Ho, IJ Lin, RJ Machida
Bioinformatics 34 (21), 3753-3754, 2018
PCR-Based Approach for Sequencing Mitochondrial Genomes of Decapod Crustaceans, with a Practical Example from Kuruma Prawn (Marsupenaeus japonicus)
MM Yamauchi, MU Miya, RJ Machida, M Nishida
Marine Biotechnology 6, 419-429, 2004
A census of zooplankton of the global ocean
A Bucklin, S Nishida, S Schnack-Schiel, PH Wiebe, D Lindsay, ...
Life in the World’s Oceans: Diversity, Distribution, and Abundance, edited …, 2010
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
M Leray, N Knowlton, RJ Machida
Environmental DNA 4 (4), 894-907, 2022
Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences
RJ Machida, A Tsuda
PLoS one 5 (4), e10278, 2010
Molecular phylogeny and evolution of the pelagic copepod genus Neocalanus (Crustacea: Copepoda)
RJ Machida, MU Miya, M Nishida, S Nishida
Marine Biology 148, 1071-1079, 2006
Genetic diversity and cryptic speciation of the deep sea chaetognath Caecosagitta macrocephala (Fowler, 1904)
H Miyamoto, RJ Machida, S Nishida
Deep Sea Research Part II: Topical Studies in Oceanography 57 (24-26), 2211-2219, 2010
Organization of the Mitochondrial Genome of Antarctic Krill Euphausia superba (Crustacea: Malacostraca)
RJ Machida, MU Miya, MM Yamauchi, M Nishida, S Nishida
Marine Biotechnology 6, 238-250, 2004
PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences
RJ Machida, M Kweskin, N Knowlton
PLoS One 7 (4), e35887, 2012
Global phylogeography of the deep-sea pelagic chaetognath Eukrohnia hamata
H Miyamoto, RJ Machida, S Nishida
Progress in oceanography 104, 99-109, 2012
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