| Discovery proteomics in aging human skeletal muscle finds change in spliceosome, immunity, proteostasis and mitochondria C Ubaida-Mohien, A Lyashkov, M Gonzalez-Freire, R Tharakan, ... Elife 8, e49874, 2019 | 150 | 2019 |
| Data maximization by multipass analysis of protein mass spectra R Tharakan, N Edwards, DRM Graham Proteomics 10 (6), 1160-1171, 2010 | 48 | 2010 |
| Translational control during cellular senescence MJ Payea, C Anerillas, R Tharakan, M Gorospe Molecular and cellular biology 41 (2), e00512-20, 2021 | 46 | 2021 |
| Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data J Hartler, R Tharakan, HC Köfeler, DR Graham, GG Thallinger Briefings in bioinformatics 14 (3), 375-390, 2013 | 45 | 2013 |
| Minireview: novel micropeptide discovery by proteomics and deep sequencing methods R Tharakan, A Sawa Frontiers in genetics 12, 651485, 2021 | 18 | 2021 |
| Blood DNA methylation and aging: a cross-sectional analysis and longitudinal validation in the InCHIANTI study R Tharakan, C Ubaida-Mohien, AZ Moore, D Hernandez, T Tanaka, ... The Journals of Gerontology: Series A 75 (11), 2051-2055, 2020 | 14 | 2020 |
| Proteomics and epidemiological models of human aging C Ubaida-Mohien, R Moaddel, AZ Moore, PL Kuo, F Faghri, R Tharakan, ... Frontiers in Physiology 12, 674013, 2021 | 12 | 2021 |
| OMSSAGUI: an open‐source user interface component to configure and run the OMSSA search engine R Tharakan, L Martens, JE Van Eyk, DR Graham Proteomics 8 (12), 2376-2378, 2008 | 12 | 2008 |
| A methodology for discovering novel brain-relevant peptides: combination of ribosome profiling and peptidomics R Tharakan, S Kreimer, C Ubaida-Mohien, J Lavoie, V Olexiouk, ... Neuroscience Research 151, 31-37, 2020 | 11 | 2020 |
| Integrated microfluidic chip and online SCX separation allows untargeted nanoscale metabolomic and peptidomic profiling R Tharakan, D Tao, C Ubaida-Mohien, RR Dinglasan, DR Graham Journal of proteome research 14 (3), 1621-1626, 2015 | 11 | 2015 |
| Ribosome profiling analysis of human skeletal muscle identifies reduced translation of mitochondrial proteins with age R Tharakan, C Ubaida-Mohien, Y Piao, M Gorospe, L Ferrucci RNA biology 18 (11), 1555-1559, 2021 | 8 | 2021 |
| Modifications in acute phase and complement systems predict shifts in cognitive status of HIV-infected patients C Ubaida-Mohien, B Lamberty, AM Dickens, MM Mielke, T Marcotte, ... Aids 31 (10), 1365-1378, 2017 | 8 | 2017 |
| Aging Skeletal Muscle Proteomics Finds Changes in Spliceosome, Immune factors, Proteostasis and Mitochondria C Ubaida-Mohien, A Lyashkov, M Gonzalez-Freire, R Tharakan, ... bioRxiv, 700468, 2019 | 4 | 2019 |
| Analysis of the skeletal muscle proteome uncovers alteration in splicing, mitochondria, and immune factors with aging C Ubaida-Mohien, A Lyashkov, M Gonzalez-Freire, R Tharakan, ... Mitochondria, and Immune Factors with Aging (May 7, 2019), 2019 | 3 | 2019 |
| Whole‐genome methylation analysis of aging human tissues identifies age‐related changes in developmental and neurological pathways R Tharakan, C Ubaida‐Mohien, C Dunn, M Kaileh, R Tryggvadottir, ... Aging Cell 22 (7), e13847, 2023 | 2 | 2023 |
| Lipidomics, Mass Spectrometry, and Bioinformatics J Hartler, HC Köfeler, CJO Baker, R Tharakan, GG Thallinger Computational Medicine: Tools and Challenges, 93-109, 2012 | 1 | 2012 |
| Understanding the Human Aging Proteome Using Epidemiological Models C Ubaida-Mohien, R Moaddel, Z Moore, PL Kuo, R Tharakan, T Tanaka, ... Computational Systems Biology in Medicine and Biotechnology: Methods and …, 2022 | | 2022 |
| Identification of a Novel Neuropeptide in Mammalian Brain Using a Ribosome Profiling and Peptidomic Approach R Tharakan, S Kreimer, CU Mohien, J Lavoie, R Cole, K Ishizuka, A Sawa, ... NEUROPSYCHOPHARMACOLOGY 43, S185-S185, 2018 | | 2018 |
| Informatic interrogation of CSF proteomic profiles from HIV-infected subjects implicates acute phase and complement systems in shifting cognitive status C Ubaida-Mohien, B Lamberty, AM Dickens, MM Mielke, T Marcotte, ... AIDS, 2017 | | 2017 |
| A Proteogenomics Framework for Discovery of Translated Micropeptides in Mouse Brain and Other Systems R Tharakan The Johns Hopkins University, 2017 | | 2017 |
