| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 31907 | 2010 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 7298 | 2012 |
| Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011 | 1830 | 2011 |
| Using QIIME to analyze 16S rRNA gene sequences from microbial communities J Kuczynski, J Stombaugh, WA Walters, A González, JG Caporaso, ... Current protocols in microbiology 27 (1), 1E. 5.1-1E. 5.20, 2012 | 1243 | 2012 |
| Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011 | 1217 | 2011 |
| Experimental and analytical tools for studying the human microbiome J Kuczynski, CL Lauber, WA Walters, LW Parfrey, JC Clemente, D Gevers, ... Nature Reviews Genetics 13 (1), 47-58, 2012 | 772 | 2012 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1, 1-6, 2012 | 728 | 2012 |
| Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420, 2011 | 653 | 2011 |
| A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis MN Rivas, OT Burton, P Wise, Y Zhang, SA Hobson, MG Lloret, ... Journal of Allergy and Clinical Immunology 131 (1), 201-212, 2013 | 412 | 2013 |
| Gut microbiota in multiple sclerosis: possible influence of immunomodulators BL Cantarel, E Waubant, C Chehoud, J Kuczynski, TZ DeSantis, ... Journal of Investigative Medicine 63 (5), 729-734, 2015 | 330 | 2015 |
| Changes in abundance of oral microbiota associated with oral cancer BL Schmidt, J Kuczynski, A Bhattacharya, B Huey, PM Corby, ... PloS one 9 (6), e98741, 2014 | 321 | 2014 |
| Microbial community resemblance methods differ in their ability to detect biologically relevant patterns J Kuczynski, Z Liu, C Lozupone, D McDonald, N Fierer, R Knight Nature methods 7 (10), 813-819, 2010 | 302 | 2010 |
| Direct sequencing of the human microbiome readily reveals community differences J Kuczynski, EK Costello, DR Nemergut, J Zaneveld, CL Lauber, ... Genome biology 11, 1-9, 2010 | 191 | 2010 |
| Comparative genomics of the Bifidobacterium brevetaxon F Bottacini, M O’Connell Motherway, J Kuczynski, KJ O’Connell, F Serafini, ... BMC genomics 15, 1-19, 2014 | 171 | 2014 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7 D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... | 96 | 2012 |
| Supervised classification of microbiota mitigates mislabeling errors D Knights, J Kuczynski, O Koren, RE Ley, D Field, R Knight, TZ DeSantis, ... The ISME journal 5 (4), 570-573, 2011 | 53 | 2011 |
| Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota AM Nelson, MD Elftman, AK Pinto, M Baldridge, P Hooper, J Kuczynski, ... Microbiome 1, 1-11, 2013 | 36 | 2013 |
| Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation JRR Zaneveld, LW Parfrey, W Van Treuren, C Lozupone, JC Clemente, ... Trends in microbiology 19 (10), 472-482, 2011 | 35 | 2011 |
| An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile M Miezeiewski, T Schnaufer, M Muravsky, S Wang, I Caro-Aguilar, ... The ISME journal 9 (2), 321-332, 2015 | 23 | 2015 |
| Identifying qualitative effects of different grazing types on below‐ground communities and function in a long‐term field experiment CA Macdonald, MJ Crawley, DJ Wright, J Kuczynski, L Robinson, ... Environmental microbiology 17 (3), 841-854, 2015 | 22 | 2015 |
