Justin Kuczynski
Justin Kuczynski
Scientist, Second Genome
Потвърден имейл адрес: secondgenome.com
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222-227, 2012
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ...
Science 332 (6032), 970-974, 2011
Bayesian community-wide culture-independent microbial source tracking
D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ...
Nature methods 8 (9), 761-763, 2011
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
J Kuczynski, J Stombaugh, WA Walters, A González, JG Caporaso, ...
Current protocols in microbiology 27 (1), 1E. 5.1-1E. 5.20, 2012
Experimental and analytical tools for studying the human microbiome
J Kuczynski, CL Lauber, WA Walters, LW Parfrey, JC Clemente, D Gevers, ...
Nature Reviews Genetics 13 (1), 47-58, 2012
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Gigascience 1 (1), 2047-217X-1-7, 2012
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis
MN Rivas, OT Burton, P Wise, Y Zhang, SA Hobson, MG Lloret, ...
Journal of Allergy and Clinical Immunology 131 (1), 201-212, 2013
Gut microbiota in multiple sclerosis: possible influence of immunomodulators
BL Cantarel, E Waubant, C Chehoud, J Kuczynski, TZ DeSantis, ...
Journal of Investigative Medicine 63 (5), 729-734, 2015
Changes in abundance of oral microbiota associated with oral cancer
BL Schmidt, J Kuczynski, A Bhattacharya, B Huey, PM Corby, ...
PloS one 9 (6), e98741, 2014
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
J Kuczynski, Z Liu, C Lozupone, D McDonald, N Fierer, R Knight
Nature methods 7 (10), 813-819, 2010
Direct sequencing of the human microbiome readily reveals community differences
J Kuczynski, EK Costello, DR Nemergut, J Zaneveld, CL Lauber, ...
Genome biology 11, 1-9, 2010
Comparative genomics of the Bifidobacterium brevetaxon
F Bottacini, M O’Connell Motherway, J Kuczynski, KJ O’Connell, F Serafini, ...
BMC genomics 15, 1-19, 2014
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...
Supervised classification of microbiota mitigates mislabeling errors
D Knights, J Kuczynski, O Koren, RE Ley, D Field, R Knight, TZ DeSantis, ...
The ISME journal 5 (4), 570-573, 2011
Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota
AM Nelson, MD Elftman, AK Pinto, M Baldridge, P Hooper, J Kuczynski, ...
Microbiome 1, 1-11, 2013
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
JRR Zaneveld, LW Parfrey, W Van Treuren, C Lozupone, JC Clemente, ...
Trends in microbiology 19 (10), 472-482, 2011
Costello, 654 EK
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman
Fierer, N., Pena, AG, Goodrich, JK, Gordon, JI and Huttley, GA 655, 2010
Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy
Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ...
Msystems 7 (2), e00167-22, 2022
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Статии 1–20