Jeremiah Faith
Gut microbiota from twins discordant for obesity modulate metabolism in mice
VK Ridaura, JJ Faith, FE Rey, J Cheng, AE Duncan, AL Kau, NW Griffin, ...
Science 341 (6150), 1241214, 2013
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ...
Nature methods 10 (1), 57-59, 2013
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
PJ Turnbaugh, VK Ridaura, JJ Faith, FE Rey, R Knight, JI Gordon
Science translational medicine 1 (6), 6ra14-6ra14, 2009
The long-term stability of the human gut microbiota
JJ Faith, JL Guruge, M Charbonneau, S Subramanian, H Seedorf, ...
Science 341 (6141), 1237439, 2013
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ...
PLoS biology 5 (1), e8, 2007
Immunology of COVID-19: current state of the science
N Vabret, GJ Britton, C Gruber, S Hegde, J Kim, M Kuksin, R Levantovsky, ...
Immunity 52 (6), 910-941, 2020
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
AL Goodman, G Kallstrom, JJ Faith, A Reyes, A Moore, G Dantas, ...
Proceedings of the National Academy of Sciences 108 (15), 6252-6257, 2011
Neutrophil ageing is regulated by the microbiome
D Zhang, G Chen, D Manwani, A Mortha, C Xu, JJ Faith, RD Burk, ...
Nature 525 (7570), 528-532, 2015
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
NP McNulty, T Yatsunenko, A Hsiao, JJ Faith, BD Muegge, AL Goodman, ...
Science translational medicine 3 (106), 106ra106-106ra106, 2011
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
PJ Turnbaugh, C Quince, JJ Faith, AC McHardy, T Yatsunenko, F Niazi, ...
Proceedings of the National Academy of Sciences 107 (16), 7503-7508, 2010
Predicting a human gut microbiota’s response to diet in gnotobiotic mice
JJ Faith, NP McNulty, FE Rey, JI Gordon
Science 333 (6038), 101-104, 2011
Dissecting the in vivo metabolic potential of two human gut acetogens
FE Rey, JJ Faith, J Bain, MJ Muehlbauer, RD Stevens, CB Newgard, ...
Journal of Biological Chemistry 285 (29), 22082-22090, 2010
Identifying gut microbe–host phenotype relationships using combinatorial communities in gnotobiotic mice
JJ Faith, PP Ahern, VK Ridaura, J Cheng, JI Gordon
Science translational medicine 6 (220), 220ra11-220ra11, 2014
Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots
MS Phillips, R Lawrence, R Sachidanandam, AP Morris, DJ Balding, ...
nature genetics 33 (3), 382-387, 2003
Microbiotas from humans with inflammatory bowel disease alter the balance of gut Th17 and RORγt+ regulatory T cells and exacerbate colitis in mice
GJ Britton, EJ Contijoch, I Mogno, OH Vennaro, SR Llewellyn, R Ng, Z Li, ...
Immunity 50 (1), 212-224. e4, 2019
Reverse-engineering transcription control networks
TS Gardner, JJ Faith
Physics of life reviews 2 (1), 65-88, 2005
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
JJ Faith, ME Driscoll, VA Fusaro, EJ Cosgrove, B Hayete, FS Juhn, ...
Nucleic acids research 36 (suppl_1), D866-D870, 2007
Specific bacteria and metabolites associated with response to fecal microbiota transplantation in patients with ulcerative colitis
S Paramsothy, S Nielsen, MA Kamm, NP Deshpande, JJ Faith, ...
Gastroenterology 156 (5), 1440-1454. e2, 2019
Interactions between diet and the intestinal microbiota alter intestinal permeability and colitis severity in mice
SR Llewellyn, GJ Britton, EJ Contijoch, OH Vennaro, A Mortha, ...
Gastroenterology 154 (4), 1037-1046. e2, 2018
Host-protozoan interactions protect from mucosal infections through activation of the inflammasome
A Chudnovskiy, A Mortha, V Kana, A Kennard, JD Ramirez, A Rahman, ...
Cell 167 (2), 444-456. e14, 2016
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