| Transcriptional regulatory networks in Saccharomyces cerevisiae TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, ... science 298 (5594), 799-804, 2002 | 3843 | 2002 |
| Transcriptional regulatory code of a eukaryotic genome CT Harbison, DB Gordon, TI Lee, NJ Rinaldi, KD Macisaac, TW Danford, ... Nature 431 (7004), 99-104, 2004 | 2667 | 2004 |
| Control of pancreas and liver gene expression by HNF transcription factors DT Odom, N Zizlsperger, DB Gordon, GW Bell, NJ Rinaldi, HL Murray, ... Science 303 (5662), 1378-1381, 2004 | 1627 | 2004 |
| An improved map of conserved regulatory sites for Saccharomyces cerevisiae KD MacIsaac, T Wang, DB Gordon, DK Gifford, GD Stormo, E Fraenkel BMC bioinformatics 7 (1), 1-14, 2006 | 848 | 2006 |
| Computational discovery of gene modules and regulatory networks Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, ... Nature biotechnology 21 (11), 1337-1342, 2003 | 795 | 2003 |
| Functional optimization of gene clusters by combinatorial design and assembly MJ Smanski, S Bhatia, D Zhao, YJ Park, LBA Woodruff, G Giannoukos, ... Nature biotechnology 32 (12), 1241-1249, 2014 | 342 | 2014 |
| Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development HH Qi, M Sarkissian, GQ Hu, Z Wang, A Bhattacharjee, DB Gordon, ... Nature 466 (7305), 503-507, 2010 | 316 | 2010 |
| Energy functions for protein design. DB Gordon, SA Marshall, SL Mayo Current opinion in structural biology 9 (4), 509-513, 1999 | 297 | 1999 |
| Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design CA Voigt, DB Gordon, SL Mayo Journal of molecular biology 299 (3), 789-803, 2000 | 263 | 2000 |
| Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing E Hodges, M Rooks, Z Xuan, A Bhattacharjee, DB Gordon, L Brizuela, ... Nature protocols 4 (6), 960-974, 2009 | 222 | 2009 |
| Apparatus and method for automated protein design SL Mayo, BI Dahiyat, DB Gordon, A Street US Patent 6,188,965, 2001 | 218 | 2001 |
| Apparatus and method for automated protein design SL Mayo, BI Dahiyat, DB Gordon, A Street, Y Su US Patent 6,269,312, 2001 | 215 | 2001 |
| Exact rotamer optimization for protein design DB Gordon, GK Hom, SL Mayo, NA Pierce Journal of computational chemistry 24 (2), 232-243, 2003 | 175 | 2003 |
| Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets DS Johnson, W Li, DB Gordon, A Bhattacharjee, B Curry, J Ghosh, ... Genome research 18 (3), 393-403, 2008 | 158 | 2008 |
| A pressure test to make 10 molecules in 90 days: external evaluation of methods to engineer biology A Casini, FY Chang, R Eluere, AM King, EM Young, QM Dudley, A Karim, ... Journal of the American Chemical Society 140 (12), 4302-4316, 2018 | 147 | 2018 |
| Branch-and-terminate: a combinatorial optimization algorithm for protein design DB Gordon, SL Mayo Structure 7 (9), 1089-1098, 1999 | 147 | 1999 |
| Apparatus and method for automated protein design SL Mayo, BI Dahiyat, DB Gordon, A Street US Patent 6,708,120, 2004 | 133 | 2004 |
| Apparatus and method for automated protein design SL Mayo, BI Dahiyat, DB Gordon, A Street US Patent 6,804,611, 2004 | 132 | 2004 |
| Radical performance enhancements for combinatorial optimization algorithms based on the dead‐end elimination theorem DB Gordon, SL Mayo Journal of Computational Chemistry 19 (13), 1505-1514, 1998 | 129 | 1998 |
| Apparatus and method for automated protein design SL Mayo, BI Dahiyat, DB Gordon, A Street US Patent 6,792,356, 2004 | 126 | 2004 |
