Yuanning Li
Yuanning Li
Department of Ecology and Evolutionary Biology, Yale University
Потвърден имейл адрес: yale.edu
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Позовавания
Позовавания
Година
Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)
Y Li, KM Kocot, C Schander, SR Santos, DJ Thornhill, KM Halanych
Molecular Phylogenetics and Evolution 85, 221-229, 2015
512015
Endosymbiont genomes yield clues of tubeworm success
Y Li, MR Liles, KM Halanych
The ISME journal 12 (11), 2785-2795, 2018
272018
Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods
Y Li, KM Kocot, NV Whelan, SR Santos, DS Waits, DJ Thornhill, ...
Zoologica Scripta 46 (2), 200-213, 2017
272017
Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation
N Li, L Bao, T Zhou, Z Yuan, S Liu, R Dunham, Y Li, K Wang, X Xu, Y Jin, ...
BMC genomics 19 (1), 1-16, 2018
222018
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ...
Science advances 6 (45), eabd0079, 2020
212020
A genome-scale phylogeny of the kingdom Fungi
Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ...
Current Biology 31 (8), 1653-1665. e5, 2021
202021
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas
PLoS biology 18 (12), e3001007, 2020
152020
Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea)
MP Galaska, Y Li, KM Kocot, AR Mahon, KM Halanych
Molecular phylogenetics and evolution 130, 115-120, 2019
122019
Multiple introns in a deep-sea Annelid (Decemunciger: Ampharetidae) mitochondrial genome
AF Bernardino, Y Li, CR Smith, KM Halanych
Scientific reports 7 (1), 1-8, 2017
122017
Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size
L Kong, Y Li, KM Kocot, Y Yang, L Qi, Q Li, KM Halanych
Molecular Phylogenetics and Evolution 150, 106857, 2020
112020
Rooting the animal tree of life
Y Li, XX Shen, B Evans, CW Dunn, A Rokas
Molecular Biology and Evolution, msab170, 2021
102021
An investigation of irreproducibility in maximum likelihood phylogenetic inference
XX Shen, Y Li, CT Hittinger, X Chen, A Rokas
Nature communications 11 (1), 1-14, 2020
102020
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi
Y Li, MG Tassia, DS Waits, VE Bogantes, KT David, KM Halanych
BMC biology 17 (1), 1-14, 2019
82019
Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters
V Novitsky, JA Steingrimsson, M Howison, FS Gillani, Y Li, A Manne, ...
Scientific reports 10 (1), 1-11, 2020
72020
Mitogenomics reveals a novel genetic code in Hemichordata
Y Li, KM Kocot, MG Tassia, JT Cannon, M Bernt, KM Halanych
Genome biology and evolution 11 (1), 29-40, 2019
72019
Life in wood: preliminary phylogeny of deep-sea wood-boring bivalves (Xylophagaidae), with descriptions of three new genera and one new species
JR Voight, BA Marshall, J Judge, KM Halanych, Y Li, AF Bernardino, ...
Journal of Molluscan Studies 85 (2), 232-243, 2019
62019
First report of Osedax in the Indian Ocean indicative of trans-oceanic dispersal through the Southern Ocean
Y Zhou, Y Wang, Y Li, C Shen, Z Liu, C Wang
Marine Biodiversity 50 (1), 1-9, 2020
42020
鄱阳湖日本沼虾 15 个群体遗传多样性的微卫星分析
苏翔, 汪桂玲, 冯建彬, 李家乐, 李远宁
生态学杂志 30 (9), 2007-2013, 2011
42011
Longitudinal typing of molecular HIV clusters in a statewide epidemic
V Novitsky, J Steingrimsson, M Howison, C Dunn, FS Gillani, A Manne, ...
AIDS 35 (11), 1711-1722, 2021
32021
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
JL Steenwyk, TJ Buida, AL Labella, Y Li, XX Shen, A Rokas
Bioinformatics 1, 7, 2021
32021
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Статии 1–20