Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis R Chauhan, J Ravi, P Datta, T Chen, D Schnappinger, KE Bassler, ... Nature communications 7 (1), 11062, 2016 | 77 | 2016 |
Network community detection using modularity density measures T Chen, P Singh, KE Bassler Journal of Statistical Mechanics: Theory and Experiment 2018 (5), 053406, 2018 | 38 | 2018 |
Enabling comprehension of patient subgroups and characteristics in large bipartite networks: implications for precision medicine SK Bhavnani, T Chen, A Ayyaswamy, S Visweswaran, G Bellala, D Rohit AMIA Summits on Translational Science Proceedings 2017, 21, 2017 | 17 | 2017 |
How high-risk comorbidities co-occur in readmitted patients with hip fracture: big data visual analytical approach SK Bhavnani, B Dang, R Penton, S Visweswaran, KE Bassler, T Chen, ... JMIR Medical Informatics 8 (10), e13567, 2020 | 11 | 2020 |
Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice AM Nia, T Chen, BL Barnette, K Khanipov, RL Ullrich, SK Bhavnani, ... BMC bioinformatics 21, 1-12, 2020 | 10 | 2020 |
Package ‘BipartiteModularityMaximization’ T Chen, W Zhang, MW Zhang, L Rcpp, I Rcpp | 2 | 2022 |
A Regulatory Network Analysis of Orphan Genes in Arabidopsis Thaliana P Singh, T Chen, Z Arendsee, ES Wurtele, KE Bassler APS March Meeting Abstracts 2017, V6. 005, 2017 | 1 | 2017 |
Identifying robust functional modules using three-body correlations in Escherichia coli T Chen, P Singh, KE Bassler Journal of Physics: Complexity 3 (1), 015013, 2022 | | 2022 |
The Role of Bipartite Networks in Stratified Predictive Modeling SK Bhavnani, C Andersen, YL Lin, EA Santillana, T Chen, YF Kuo AMIA, 2019 | | 2019 |
Bipartite Network Analysis with Multiple Datatypes: Implications for Precision Medicine in the Age of Multi-omics Data T Chen, YL Lin, IC Liao, YF Kuo, EA Santillana, C Andersen, ... AMIA, 2019 | | 2019 |
Network community detection using modularity density measures P Singh, T Chen, K Bassler APS March Meeting Abstracts 2018, S47. 003, 2018 | | 2018 |
Detecting Functional Structures in E. coli Gene Networks from Expression Data T Chen, M Opitz, KE Bassler APS March Meeting Abstracts 2017, V6. 004, 2017 | | 2017 |
Vicinity Exploration: Enabling User-Driven Visual Search of Multiple Machine Learning Models for Precision Medicine SK Bhavnani, A Ayyaswami, T Chen, S Visweswaran, G Bellala, ... AMIA, 2017 | | 2017 |
Identification of Patient Subgroups in Metastatic Breast Cancer Patients Based on Somatic Copy Number Alterations: A Bipartite Network Analysis SK Bhavnani, A Ayyaswami, T Chen, JL Warner AMIA, 2017 | | 2017 |
ExplodeLayout: Comprehending Patient Subgroups in Large Networks BS Bryant Dang, MS Joseph Mathew, BS Tianlong Chen, K Suresh | | |