Hongfang Liu

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Sunghwan SohnAssociate Professor of Biomedical Informatics, Mayo ClinicVerified email at mayo.edu
Yanshan Wang, PhD, FAMIAAssistant Professor and Vice Chair of Research, University of PittsburghVerified email at pitt.edu
Liwei Wang, MD., PhDAssistant Professor of Biomedical Informatics, Mayo Clinic Alix School of MedicineVerified email at mayo.edu
Feichen Shen, PhD, FAMIASr. Principal Scientist at Bristol Myers Squibb, Adjunct Associate Professor at Mayo ClinicVerified email at bms.com
Sijia LiuPrincipal Data Science Analyst, Mayo ClinicVerified email at mayo.edu
Majid Rastegar-MojaradInformatics Specialist , Mayo ClinicVerified email at uwm.edu
Dingcheng LiResearch Scientist, CCL and Ex_BDL, Baidu USVerified email at mayo.edu
Stephen WuAssociate Professor, UTHealthVerified email at uth.tmc.edu
Carol FriedmanColumbia UniversityVerified email at columbia.edu
Kavishwar Wagholikar, MD, PhDMassachusetts General Hospital/ Harvard Medical SchoolVerified email at mgh.harvard.edu
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
Naveed Afzal Ph.D.Lead Data Scientist, HumanaVerified email at humana.com
Manabu ToriiKaiser PermanenteVerified email at kp.org
Siddhartha "Sid J Reddy" JonnalagaddaAmazonVerified email at berkeley.edu
Cui TaoProfessor, University of Texas Health Science Center at HoustonVerified email at uth.tmc.edu
George HripcsakColumbia UniversityVerified email at columbia.edu
Judith BlakeProfessor of Mammalian GeneticsVerified email at jax.org
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Yves A. Lussier, B. Engineer., M.D., Fe...Professor and Chair, Department of Biomedical Informatics, University of Utah School of MedicineVerified email at utah.edu
Ari B KahnSRA InternationalVerified email at betterefficiencysolutions.com

Hongfang Liu

Professor of Biomedical Informatics, Mayo Clinic

Verified email at mayo.edu

Clinical informatics terminology information management natural language processing bioNLP


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Clinical information extraction applications: a literature review Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ... Journal of biomedical informatics 77, 34-49, 2018	499	2018
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ... Cancer research 72 (14), 3499-3511, 2012	492	2012
Overview of BioCreative II gene mention recognition L Smith, LK Tanabe, CJ Kuo, I Chung, CN Hsu, YS Lin, R Klinger, ... Genome biology 9 (2), 1-19, 2008	406	2008
Overview of BioCreative II gene normalization AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ... Genome biology 9 (2), 1-19, 2008	384	2008
A comparison of word embeddings for the biomedical natural language processing Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ... Journal of biomedical informatics 87, 12-20, 2018	291	2018
CLAMP–a toolkit for efficiently building customized clinical natural language processing pipelines E Soysal, J Wang, M Jiang, Y Wu, S Pakhomov, H Liu, H Xu Journal of the American Medical Informatics Association 25 (3), 331-336, 2018	253	2018
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	216	2015
Building effective defect-prediction models in practice AG Koru, H Liu IEEE software 22 (6), 23-29, 2005	216	2005
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ... Journal of the American Medical Informatics Association 22 (1), 179-191, 2015	205	2015
Gene name ambiguity of eukaryotic nomenclatures L Chen, H Liu, C Friedman Bioinformatics 21 (2), 248-256, 2005	194	2005
An investigation into the functional form of the size-defect relationship for software modules AG Koru, D Zhang, K El Emam, H Liu IEEE Transactions on Software Engineering 35 (2), 293-304, 2008	170	2008
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS H Liu, SB Johnson, C Friedman Journal of the American Medical Informatics Association 9 (6), 621-636, 2002	165	2002
The gene normalization task in BioCreative III Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ... BMC bioinformatics 12 (8), 1-19, 2011	164	2011
Representing information in patient reports using natural language processing and the extensible markup language C Friedman, G Hripcsak, L Shagina, H Liu Journal of the American Medical Informatics Association 6 (1), 76-87, 1999	164	1999
Framework for a protein ontology DA Natale, CN Arighi, WC Barker, J Blake, TC Chang, Z Hu, H Liu, ... BMC bioinformatics 8 (9), 1-12, 2007	153	2007
mRNA and microRNA Expression Profiles of the NCI-60 Integrated with Drug ActivitiesAgilent mRNA and microRNA Profiling in NCI-60 H Liu, P D'Andrade, S Fulmer-Smentek, P Lorenzi, KW Kohn, ... Molecular cancer therapeutics 9 (5), 1080-1091, 2010	152	2010
Using machine learning for concept extraction on clinical documents from multiple data sources M Torii, K Wagholikar, H Liu Journal of the American Medical Informatics Association 18 (5), 580-587, 2011	149	2011
An information extraction framework for cohort identification using electronic health records H Liu, SJ Bielinski, S Sohn, S Murphy, KB Wagholikar, SR Jonnalagadda, ... AMIA Summits on Translational Science Proceedings 2013, 149, 2013	147	2013
BioThesaurus: a web-based thesaurus of protein and gene names H Liu, ZZ Hu, J Zhang, C Wu Bioinformatics 22 (1), 103-105, 2006	145	2006
Disambiguating ambiguous biomedical terms in biomedical narrative text: an unsupervised method H Liu, YA Lussier, C Friedman Journal of biomedical informatics 34 (4), 249-261, 2001	132	2001

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