Maude Pupin
Maude Pupin
Maître de conférences en informatique, Université de Lille
Потвърден имейл адрес: univ-lille.fr - Начална страница
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Позовавания
Позовавания
Година
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, GO Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
42711997
NORINE: a database of nonribosomal peptides
S Caboche, M Pupin, V Leclère, A Fontaine, P Jacques, G Kucherov
Nucleic acids research 36 (suppl 1), D326-D331, 2008
2832008
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity
S Caboche, V Leclère, M Pupin, G Kucherov, P Jacques
Journal of bacteriology 192 (19), 5143-5150, 2010
1022010
A revised annotation and comparative analysis of Helicobacter pylori genomes
IG Boneca, H Reuse, JC Epinat, M Pupin, A Labigne, I Moszer
Nucleic Acids Research 31 (6), 1704-1714, 2003
1022003
Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.
M Béchet, T Caradec, W Hussein, A Abderrahmani, M Chollet, V Leclère, ...
Applied microbiology and biotechnology 95 (3), 593-600, 2012
582012
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing
A Flissi, Y Dufresne, J Michalik, L Tonon, S Janot, L Noé, P Jacques, ...
Nucleic acids research 44 (D1), D1113-D1118, 2015
442015
Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis
Q Esmaeel, M Pupin, NP Kieu, G Chataigné, M Béchet, J Deravel, F Krier, ...
MicrobiologyOpen 5 (3), 512-526, 2016
392016
Structural pattern matching of nonribosomal peptides
S Caboche, M Pupin, V Leclère, P Jacques, G Kucherov
BMC structural biology 9 (1), 15, 2009
362009
Comparing sequences without using alignments: application to HIV/SIV subtyping
G Didier, L Debomy, M Pupin, M Zhang, A Grossmann, C Devauchelle, ...
BMC bioinformatics 8 (1), 1, 2007
262007
Prediction of monomer isomery in Florine: a workflow dedicated to nonribosomal peptide discovery
T Caradec, M Pupin, A Vanvlassenbroeck, MD Devignes, ...
PloS one 9 (1), e85667, 2014
242014
Prediction of new bioactive molecules using a bayesian belief network
A Abdo, V Leclère, P Jacques, N Salim, M Pupin
Journal of chemical information and modeling 54 (1), 30-36, 2014
242014
Detecting localized repeats in genomic sequences: a new strategy and its application to Bacillus subtilis and Arabidopsis thaliana sequences
M Klaerr-Blanchard, H Chiapello, E Coward
Computers & chemistry 24 (1), 57-70, 2000
232000
Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals
Q Esmaeel, M Pupin, P Jacques, V Leclère
Environmental Science and Pollution Research 25 (30), 29794-29807, 2018
192018
Norine: a powerful resource for novel nonribosomal peptide discovery
M Pupin, Q Esmaeel, A Flissi, Y Dufresne, P Jacques, V Leclère
Synthetic and Systems Biotechnology 1 (2), 89-94, 2016
182016
Local decoding of sequences and alignment-free comparison
G Didier, I Laprevotte, M Pupin, A Hénaut
Journal of Computational Biology 13 (8), 1465-1476, 2006
182006
A new fingerprint to predict nonribosomal peptides activity
A Abdo, S Caboche, V Leclère, P Jacques, M Pupin
Journal of computer-aided molecular design 26 (10), 1187-1194, 2012
142012
Smiles2Monomers: a link between chemical and biological structures for polymers
Y Dufresne, L Noé, V Leclère, M Pupin
Journal of cheminformatics 7 (1), 62, 2015
122015
HIV-1 and HIV-2 LTR nucleotide sequences: assessment of the alignment by N-block presentation,“retroviral signatures” of overrepeated oligonucleotides, and a probable important …
I Laprevotte, M Pupin, E Coward, G Didier, C Terzian, C Devauchelle, ...
Molecular biology and evolution 18 (7), 1231-1245, 2001
112001
Bioinformatics tools for the discovery of new nonribosomal peptides
V Leclère, T Weber, P Jacques, M Pupin
Nonribosomal Peptide and Polyketide Biosynthesis, 209-232, 2016
72016
Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications
M Pupin, A Flissi, P Jacques, V Leclère
European Journal of Plant Pathology 152 (4), 993-1001, 2018
32018
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Статии 1–20