Следене
Shawn T O'Neil
Shawn T O'Neil
Assistant Professor of Research, University of Colorado Anschutz
Потвърден имейл адрес: cgrb.oregonstate.edu - Начална страница
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Позовавания
Позовавания
Година
The National COVID Cohort Collaborative (N3C): rationale, design, infrastructure, and deployment
MA Haendel, CG Chute, TD Bennett, DA Eichmann, J Guinney, WA Kibbe, ...
Journal of the American Medical Informatics Association 28 (3), 427-443, 2021
3942021
Assessing De Novo transcriptome assembly metrics for consistency and utility
ST O’Neil, SJ Emrich
BMC genomics 14, 1-12, 2013
1482013
Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon
ST O'Neil, JDK Dzurisin, RD Carmichael, NF Lobo, SJ Emrich, ...
BMC genomics 11, 1-15, 2010
1442010
A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries
S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc
Journal of Experimental Botany 65 (20), 5889-5902, 2014
572014
Association of early aspirin use with in-hospital mortality in patients with moderate COVID-19
JH Chow, A Rahnavard, M Gomberg-Maitland, R Chatterjee, P Patodi, ...
JAMA network open 5 (3), e223890-e223890, 2022
442022
Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient
SF Ryan, MC Fontaine, JM Scriber, ME Pfrender, ST O'Neil, JJ Hellmann
Molecular ecology 26 (18), 4725-4742, 2017
292017
Newsvendor problems with demand shocks and unknown demand distributions
S O'Neil, X Zhao, D Sun, JC Wei
Decision Sciences 47 (1), 125-156, 2016
292016
Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world
ST O'Neil, JDK Dzurisin, CM Williams, NF Lobo, JK Higgins, JM Deines, ...
Molecular ecology 23 (11), 2686-2698, 2014
272014
Haplotype and minimum-chimerism consensus determination using short sequence data
ST O'Neil, SJ Emrich
BMC genomics 13, 1-12, 2012
262012
Post-recovery COVID-19 and incident heart failure in the National COVID Cohort Collaborative (N3C) study
HM Salah, M Fudim, ST O’Neil, A Manna, CG Chute, MC Caughey
Nature communications 13 (1), 4117, 2022
252022
Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment
AS Fister, ST O’Neil, Z Shi, Y Zhang, BM Tyler, MJ Guiltinan, ...
Journal of experimental botany 66 (20), 6245-6258, 2015
242015
The characterization of the Phlebotomus papatasi transcriptome
J Abrudan, M Ramalho‐Ortigão, S O'Neil, G Stayback, M Wadsworth, ...
Insect molecular biology 22 (2), 211-232, 2013
222013
Risk for stillbirth among pregnant individuals with SARS-CoV-2 infection varied by gestational age
T Lyu, C Liang, J Liu, P Hung, J Zhang, B Campbell, N Ghumman, ...
American journal of obstetrics and gynecology 229 (3), 288. e1-288. e13, 2023
92023
Robust haplotype reconstruction of eukaryotic read data with Hapler
ST O'Neil, SJ Emrich
2011 IEEE 1st International Conference on Computational Advances in Bio and …, 2011
92011
Comparing online learning algorithms to stochastic approaches for the multi-period newsvendor problem
S O'Neil, A Chaudhary
2008 Proceedings of the Tenth Workshop on Algorithm Engineering and …, 2008
72008
A k-mer based transcriptomics approach for antisense drug discovery targeting the Ewing’s family of tumors
AJ Annalora, S O’Neil, JD Bushman, JE Summerton, CB Marcus, ...
Oncotarget 9 (55), 30568, 2018
62018
Accurate transcription start sites enable mining for the cis-regulatory determinants of tissue specific gene expression
M Ansariola, VN Fraser, SA Filichkin, MG Ivanchenko, ZA Bright, ...
BioRxiv, 2020.09. 01.278424, 2020
32020
Implementing Persistent O (1) Stacks and Queues in R
ST O’Neil
R JOURNAL 7 (1), 118-126, 2015
32015
A Primer for Computational Biology
ST O'Neil
Oregon State University Press, 2017
22017
The topology aware file distribution problem
ST O’Neil, A Chaudhary, DZ Chen, H Wang
Journal of Combinatorial Optimization 26 (4), 621-635, 2013
12013
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